ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 pr... 30 1.2
2NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 pr... 30 1.2
3FP2_MYTGA (Q25464) Adhesive plaque matrix protein 2 precursor (F... 28 4.6
4NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 prec... 28 6.0
5TENA_HUMAN (P24821) Tenascin precursor (TN) (Hexabrachion) (Cyto... 28 7.9
6CHK1_HUMAN (O14757) Serine/threonine-protein kinase Chk1 (EC 2.7... 28 7.9

>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (Motch B) [Contains: Notch 2 extracellular
           truncation; Notch 2 intracellular domain]
          Length = 2470

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -1

Query: 189 CVCV-------CDKKLCRCMNN*GNRGACPMGLIGMRKLSSAGYRSMDCRVQK 52
           C+C        C  ++  C++N    G C  GL G + L  AG+  ++C V K
Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756



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>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (hN2) [Contains: Notch 2 extracellular truncation;
           Notch 2 intracellular domain]
          Length = 2471

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -1

Query: 189 CVCV-------CDKKLCRCMNN*GNRGACPMGLIGMRKLSSAGYRSMDCRVQK 52
           C+C        C  ++  C++N    G C  GL G + L  AG+  ++C V K
Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758



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>FP2_MYTGA (Q25464) Adhesive plaque matrix protein 2 precursor (Foot protein|
           2) (MGFP2) (MGFP-2)
          Length = 473

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
 Frame = -1

Query: 189 CVC-------VCDKKLCR---CMNN*GNRGAC-PMGLIGMRKLSSAGYRSMDCRV 58
           CVC       +C+K +C    C NN    G C P+G  G +   S GY    C V
Sbjct: 106 CVCRNGNFGRLCEKNVCSPNPCKNN----GKCSPLGKTGYKCTCSGGYTGPRCEV 156



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>NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) [Contains: Notch 2 extracellular truncation; Notch 2
           intracellular domain]
          Length = 2471

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 177 CDKKLCRCMNN*GNRGACPMGLIGMRKLSSAGYRSMDCRVQK 52
           C  ++  C+++    G C  GL G + L  AG+  ++C V K
Sbjct: 717 CYSQVNECLSSPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758



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>TENA_HUMAN (P24821) Tenascin precursor (TN) (Hexabrachion) (Cytotactin)|
           (Neuronectin) (GMEM) (JI) (Miotendinous antigen)
           (Glioma-associated-extracellular matrix antigen) (GP
           150-225) (Tenascin-C) (TN-C)
          Length = 2201

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 22/79 (27%), Positives = 33/79 (41%)
 Frame = -1

Query: 255 EHVRCRDLMLLCYPCLLTPELACVCVCDKKLCRCMNN*GNRGACPMGLIGMRKLSSAGYR 76
           EH  C D + +C+      +      C+K LC  +NN  NRG C    +    +   G+ 
Sbjct: 259 EHGTCVDGLCVCHDGFAGDD------CNKPLC--LNNCYNRGRC----VENECVCDEGFT 306

Query: 75  SMDCRVQKKSLVLPNNEVD 19
             DC      L+ PN+  D
Sbjct: 307 GEDC----SELICPNDCFD 321



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>CHK1_HUMAN (O14757) Serine/threonine-protein kinase Chk1 (EC 2.7.11.1)|
          Length = 476

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 124 PDGFDRHAEAQLSWLPVNGLSCAEKI 47
           P GF +H ++ L + PVN  S  E +
Sbjct: 287 PSGFSKHIQSNLDFSPVNSASSEENV 312


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,137,501
Number of Sequences: 219361
Number of extensions: 829349
Number of successful extensions: 1634
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1632
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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