Clone Name | rbastl50a04 |
---|---|
Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 210 bits (106), Expect = 2e-51 Identities = 137/147 (93%), Gaps = 4/147 (2%) Strand = Plus / Minus Query: 25 ttcattattgggcaaaacaagggattttttctgcacacgacaatccattgaccggtagcc 84 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837 Query: 85 agctgagctgagcttccgcatgccgatcaaacccatcgggcacgcaccc----ctattgc 140 ||||||||||||||||||||||||||||| |||| ||| |||||||||| |||||| Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777 Query: 141 cttaattattcatgcaccggcacaact 167 ||||||||||||||||||||||||||| Sbjct: 2776 cttaattattcatgcaccggcacaact 2750 Score = 143 bits (72), Expect = 3e-31 Identities = 90/96 (93%) Strand = Plus / Minus Query: 190 agctagctccggtgtaagcaagcagggatagcacaaaagcatgaggtctcgacaacggac 249 |||||||||||||||||||||||| |||||||||||| |||||||||||| || |||||| Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668 Query: 250 gtgctcaaatcaaatggatatgctgttcgggatgcc 285 ||||||| |||| ||||||||||||||||||||||| Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcc 2632
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 56.0 bits (28), Expect = 6e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 18 catcgacttcattattgggcaaaacaagggattttttctgcacacgac 65 ||||||||| ||||||||||||| |||||| |||||||| ||||||| Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgac 1052
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence Length = 37711 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 aaacaagggattttttctgca 59 ||||||||||||||||||||| Sbjct: 32565 aaacaagggattttttctgca 32585
>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene) Length = 2967 Score = 42.1 bits (21), Expect = 0.94 Identities = 27/29 (93%) Strand = Plus / Minus Query: 257 aatcaaatggatatgctgttcgggatgcc 285 ||||||||||| |||||||| |||||||| Sbjct: 2776 aatcaaatggagatgctgttggggatgcc 2748
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24, complete sequence Length = 155584 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 gcaaaacaagggattttttct 56 ||||||||||||||||||||| Sbjct: 39634 gcaaaacaagggattttttct 39614
>gb|AC165084.6| Mus musculus BAC clone RP23-352H11 from chromosome 7, complete sequence Length = 182827 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 ctattgccttaattattcat 153 |||||||||||||||||||| Sbjct: 27355 ctattgccttaattattcat 27336
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12, complete sequence Length = 155402 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 tattgccttaattattcatg 154 |||||||||||||||||||| Sbjct: 136196 tattgccttaattattcatg 136215 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 tattgccttaattattcatg 154 |||||||||||||||||||| Sbjct: 94217 tattgccttaattattcatg 94236
>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin (LOC579890), mRNA Length = 1542 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ggagggaacatcacaccatc 21 |||||||||||||||||||| Sbjct: 1457 ggagggaacatcacaccatc 1438
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 tattgccttaattattcatg 154 |||||||||||||||||||| Sbjct: 21745020 tattgccttaattattcatg 21745039 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 tattgccttaattattcatg 154 |||||||||||||||||||| Sbjct: 21703041 tattgccttaattattcatg 21703060
>gb|AC151412.2| Mus musculus BAC clone RP23-229E19 from 7, complete sequence Length = 228343 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ctattgccttaattattcat 153 |||||||||||||||||||| Sbjct: 35075 ctattgccttaattattcat 35094 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,841,293 Number of Sequences: 3902068 Number of extensions: 1841293 Number of successful extensions: 34424 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34396 Number of HSP's gapped (non-prelim): 27 length of query: 285 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 263 effective length of database: 17,147,199,772 effective search space: 4509713540036 effective search space used: 4509713540036 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)