ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 210 2e-51
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 56 6e-05
3emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.94
4emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2... 42 0.94
5emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.94
6gb|AC165084.6| Mus musculus BAC clone RP23-352H11 from chromosom... 40 3.7
7gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7
8ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 3.7
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
10gb|AC151412.2| Mus musculus BAC clone RP23-229E19 from 7, comple... 40 3.7

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  210 bits (106), Expect = 2e-51
 Identities = 137/147 (93%), Gaps = 4/147 (2%)
 Strand = Plus / Minus

                                                                        
Query: 25   ttcattattgggcaaaacaagggattttttctgcacacgacaatccattgaccggtagcc 84
            ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 85   agctgagctgagcttccgcatgccgatcaaacccatcgggcacgcaccc----ctattgc 140
            ||||||||||||||||||||||||||||| |||| ||| ||||||||||     ||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                       
Query: 141  cttaattattcatgcaccggcacaact 167
            |||||||||||||||||||||||||||
Sbjct: 2776 cttaattattcatgcaccggcacaact 2750



 Score =  143 bits (72), Expect = 3e-31
 Identities = 90/96 (93%)
 Strand = Plus / Minus

                                                                        
Query: 190  agctagctccggtgtaagcaagcagggatagcacaaaagcatgaggtctcgacaacggac 249
            |||||||||||||||||||||||| |||||||||||| |||||||||||| || ||||||
Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668

                                                
Query: 250  gtgctcaaatcaaatggatatgctgttcgggatgcc 285
            ||||||| |||| |||||||||||||||||||||||
Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcc 2632



to top

>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence
          Length = 1129

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 18   catcgacttcattattgggcaaaacaagggattttttctgcacacgac 65
            ||||||||| |||||||||||||  |||||| |||||||| |||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgac 1052



to top

>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    aaacaagggattttttctgca 59
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585



to top

>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene)
          Length = 2967

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 257  aatcaaatggatatgctgttcgggatgcc 285
            ||||||||||| |||||||| ||||||||
Sbjct: 2776 aatcaaatggagatgctgttggggatgcc 2748



to top

>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    gcaaaacaagggattttttct 56
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614



to top

>gb|AC165084.6| Mus musculus BAC clone RP23-352H11 from chromosome 7, complete sequence
          Length = 182827

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   ctattgccttaattattcat 153
             ||||||||||||||||||||
Sbjct: 27355 ctattgccttaattattcat 27336



to top

>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    tattgccttaattattcatg 154
              ||||||||||||||||||||
Sbjct: 136196 tattgccttaattattcatg 136215



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   tattgccttaattattcatg 154
             ||||||||||||||||||||
Sbjct: 94217 tattgccttaattattcatg 94236



to top

>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin
            (LOC579890), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    ggagggaacatcacaccatc 21
            ||||||||||||||||||||
Sbjct: 1457 ggagggaacatcacaccatc 1438



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 135      tattgccttaattattcatg 154
                ||||||||||||||||||||
Sbjct: 21745020 tattgccttaattattcatg 21745039



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 135      tattgccttaattattcatg 154
                ||||||||||||||||||||
Sbjct: 21703041 tattgccttaattattcatg 21703060



to top

>gb|AC151412.2| Mus musculus BAC clone RP23-229E19 from 7, complete sequence
          Length = 228343

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   ctattgccttaattattcat 153
             ||||||||||||||||||||
Sbjct: 35075 ctattgccttaattattcat 35094


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,841,293
Number of Sequences: 3902068
Number of extensions: 1841293
Number of successful extensions: 34424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34396
Number of HSP's gapped (non-prelim): 27
length of query: 285
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 263
effective length of database: 17,147,199,772
effective search space: 4509713540036
effective search space used: 4509713540036
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top