ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl50a03 |
|---|---|
| Clone Library Name | barley_pub |
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) Length = 1095 Score = 81.6 bits (200), Expect = 4e-16 Identities = 38/47 (80%), Positives = 46/47 (97%) Frame = -2 Query: 401 EARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 261 +A+NFLDGDLIESFLDL+R++MEE++KAM+VPVEEL KRVEELTRLH Sbjct: 1049 DAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1095
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) (High pigmentation protein 1) Length = 1090 Score = 81.6 bits (200), Expect = 4e-16 Identities = 38/47 (80%), Positives = 46/47 (97%) Frame = -2 Query: 401 EARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 261 +A+NFLDGDLIESFLDL+R++MEE++KAM+VPVEEL KRVEELTRLH Sbjct: 1044 DAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1090
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 78.6 bits (192), Expect = 3e-15 Identities = 38/47 (80%), Positives = 44/47 (93%) Frame = -2 Query: 401 EARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 261 EARNFLDGDLIESFLDL+R+KME+++K+M V VEEL KRVEELTRLH Sbjct: 1042 EARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEELTRLH 1088
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 74.3 bits (181), Expect = 6e-14 Identities = 36/47 (76%), Positives = 41/47 (87%) Frame = -2 Query: 401 EARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 261 EA+ +LDGDLIESFLDL+R KMEE++K M V VEEL KRVEELTRLH Sbjct: 1042 EAKGYLDGDLIESFLDLSRGKMEEISKGMDVQVEELCKRVEELTRLH 1088
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 47.8 bits (112), Expect = 6e-06 Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 10/56 (17%) Frame = -2 Query: 398 ARNFLDGDLIESFLDLNRSKMEEVAKAM----------AVPVEELSKRVEELTRLH 261 A F+DGDLIESFLD++R KM+EV + ++L K VEELTR+H Sbjct: 1085 ATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 47.8 bits (112), Expect = 6e-06 Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 10/56 (17%) Frame = -2 Query: 398 ARNFLDGDLIESFLDLNRSKMEEVAKAM----------AVPVEELSKRVEELTRLH 261 A F+DGDLIESFLD++R KM+EV + ++L K VEELTR+H Sbjct: 1085 ATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1| Length = 1219 Score = 32.0 bits (71), Expect = 0.36 Identities = 13/41 (31%), Positives = 27/41 (65%) Frame = -2 Query: 395 RNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 273 +N +DGDL+E FL+ + S E+++ + V ++ K++ +L Sbjct: 1173 KNVIDGDLLERFLEFDISLKIEISRKLNKSVNDIEKKLIDL 1213
>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1| Length = 1256 Score = 31.6 bits (70), Expect = 0.47 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = -2 Query: 395 RNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 273 +N +DGDLIE F +L++S + + E+ K++ E+ Sbjct: 1210 KNVMDGDLIERFYELSQSMKIRIGTELNRTPREIEKKISEM 1250
>RSE1_YEAST (Q04693) Pre-mRNA splicing factor RSE1 (RNA splicing and ER to Golgi| transport factor 1) (Spliceosome-associated protein 130) Length = 1361 Score = 31.6 bits (70), Expect = 0.47 Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Frame = -2 Query: 395 RNFLDGDLIESFLDLNRSKMEEVAKAM-AVPVEELSKRVEEL 273 R +DGDL E+FL L+ ++ E +AK + +V VE++ + + E+ Sbjct: 1315 RKVIDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINEV 1356
>IFNG_SIGHI (Q9QXX2) Interferon gamma precursor (IFN-gamma)| Length = 170 Score = 30.8 bits (68), Expect = 0.81 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Frame = -2 Query: 401 EARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEEL 273 E+ N + DLI +F + +R KM++ K +PV +L K V EL Sbjct: 88 ESINTIRADLIVNFFNNSREKMDDFIKLTTIPVNDLQVQRKAVNEL 133
>CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity factor, 160 kDa| subunit (CPSF 160 kDa subunit) (CPSF-160) (dCPSF) Length = 1455 Score = 30.8 bits (68), Expect = 0.81 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = -2 Query: 398 ARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRL 264 +R +DGDLI S+ + S+ EVAK + EE+ + E+ RL Sbjct: 1407 SRCIIDGDLIWSYRLMANSERNEVAKKIGTRTEEILGDLLEIERL 1451
>APOL4_HUMAN (Q9BPW4) Apolipoprotein-L4 precursor (Apolipoprotein L-IV)| (ApoL-IV) Length = 351 Score = 29.3 bits (64), Expect = 2.3 Identities = 12/39 (30%), Positives = 24/39 (61%) Frame = -2 Query: 377 DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 261 +L++ LDL++ E A+++ +EL + + ELT +H Sbjct: 307 NLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIH 345
>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) Length = 1072 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%) Frame = -2 Query: 392 NFLDGDLIESFLDLNRSKMEEVAKA------MAVPVEELSKRVEELTRLH 261 + +DG LIES L L + E+ + + V++L +E L +LH Sbjct: 1022 DLIDGSLIESILGLREPILNEIVNGGHEGTKLDISVQDLKSIIENLEKLH 1071
>CPSF1_CAEEL (Q9N4C2) Probable cleavage and polyadenylation specificity factor,| 160 kDa subunit (CPSF 160 kDa subunit) Length = 1454 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/45 (28%), Positives = 26/45 (57%) Frame = -2 Query: 398 ARNFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRL 264 ARN +DGD++E +L L+ ++A+ + V + + +L R+ Sbjct: 1406 ARNLIDGDVVEQYLHLSLYDKTDLARRLGVGRYHIIDDLMQLRRM 1450
>TRX_DROVI (Q24742) Protein trithorax| Length = 3828 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +1 Query: 46 VMFDNALLINNGDSPLK-FYISTDKVTLLSKSKTEKRNVATNTCRGS 183 V F N L ++ S +K FY ++V L+S K + N N CRGS Sbjct: 394 VTFKNILETSDDKSVVKRFYNPDNRVPLVSIMKKDSLNRPLNYCRGS 440
>MODA_MYCTU (P0A5Y0) Molybdate-binding protein precursor| Length = 261 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 371 IESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 261 I SF DL R + V +VP ++R+E+ T +H Sbjct: 133 IRSFADLTRPGLNVVVCQPSVPCGSATRRIEDATGIH 169
>MODA_MYCBO (P0A5Y1) Molybdate-binding protein precursor| Length = 261 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 371 IESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 261 I SF DL R + V +VP ++R+E+ T +H Sbjct: 133 IRSFADLTRPGLNVVVCQPSVPCGSATRRIEDATGIH 169
>Y1901_STRPN (Q97NV8) Hypothetical RNA methyltransferase SP1901 (EC 2.1.1.-)| Length = 451 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +3 Query: 27 YTKLSGCHV*QCTADKQRRFTTKILHQHR*SYTLIKVENRE 149 Y + GC + DKQ F T +LHQ + EN E Sbjct: 76 YNECGGCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYE 116
>Y1717_STRR6 (Q8DNH6) Hypothetical RNA methyltransferase spr1717 (EC 2.1.1.-)| Length = 451 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +3 Query: 27 YTKLSGCHV*QCTADKQRRFTTKILHQHR*SYTLIKVENRE 149 Y + GC + DKQ F T +LHQ + EN E Sbjct: 76 YNECGGCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYE 116
>MPPA1_ARATH (Q9ZU25) Probable mitochondrial-processing peptidase alpha subunit| 1, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 1) Length = 503 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = -2 Query: 386 LDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELT 270 L+G+L+E F+ N + V A V EEL K E LT Sbjct: 240 LNGELLEEFMTENFTAARMVLAASGVEHEELLKVAEPLT 278
>Y429_METAC (Q8TTK2) UPF0272 protein MA0429| Length = 396 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 Query: 335 EEVAKAMAVPVEELSKRVEELTR 267 +++AKA +PV E+ +R EE+ R Sbjct: 370 KKIAKASGIPVREIMRRTEEVAR 392
>IFNG_MOSBE (Q647G2) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -2 Query: 377 DLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 264 D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 99 DMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139
>IFNG_CAPHI (P79154) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -2 Query: 377 DLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 264 D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 99 DMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139
>IFNG_BUBBU (Q8SPW9) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -2 Query: 377 DLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 264 D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 99 DMFQKFLNGSSEKLEDFKKLIQIPVDDLQTQRKAINELIKV 139
>IFNG_BOVIN (P07353) Interferon gamma precursor (IFN-gamma)| Length = 166 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -2 Query: 377 DLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEELTRL 264 D+ + FL+ + K+E+ K + +PV++L K + EL ++ Sbjct: 99 DMFQKFLNGSSEKLEDFKKLIQIPVDDLQIQRKAINELIKV 139
>RPF53_MOUSE (Q8K202) DNA-directed RNA polymerase I-associated factor 53 kDa| subunit (EC 2.7.7.6) (RNA polymerase I-associated factor 1) Length = 482 Score = 27.3 bits (59), Expect = 8.9 Identities = 19/49 (38%), Positives = 23/49 (46%) Frame = +1 Query: 46 VMFDNALLINNGDSPLKFYISTDKVTLLSKSKTEKRNVATNTCRGSFSG 192 V F N L N GD Y STD L++ + R VA T R S+ G Sbjct: 41 VQFSNGKLQNPGDMRFTLYNSTD---LVNPRQRSHRIVAAETDRLSYVG 86
>ERG28_ARATH (O80594) Probable ergosterol biosynthetic protein 28| Length = 110 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -1 Query: 243 CTSCFICSFSLCCKPL 196 CT CF+C+F+L KPL Sbjct: 55 CTLCFLCAFNLENKPL 70 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,360,632 Number of Sequences: 219361 Number of extensions: 792914 Number of successful extensions: 2375 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2323 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2372 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
