>gb|BT018953.1| Zea mays clone Contig145.F mRNA sequence
          Length = 1561

 Score =  103 bits (52), Expect = 4e-19
 Identities = 91/104 (87%)
 Strand = Plus / Minus

                                                                        
Query: 295  acctgtggcttcatgatcctcacgctggtgtagaaacgcttgaagtccttcattgcttgt 354
            ||||| ||||| | ||||||||||||| ||||||| ||| ||||||||||||| || || 
Sbjct: 1394 acctgcggcttgacgatcctcacgctgctgtagaagcgcctgaagtccttcatagcctgc 1335

                                                        
Query: 355  tcctcaatctggatcgagcggatggaggacggggtgtcagtctc 398
            ||||| |||||||| ||||||||||||||||||| ||| |||||
Sbjct: 1334 tcctcgatctggatggagcggatggaggacggggcgtcggtctc 1291

>gb|BT017710.1| Zea mays clone EL01N0446C12.c mRNA sequence
          Length = 768

 Score =  103 bits (52), Expect = 4e-19
 Identities = 91/104 (87%)
 Strand = Plus / Minus

                                                                       
Query: 295 acctgtggcttcatgatcctcacgctggtgtagaaacgcttgaagtccttcattgcttgt 354
           ||||| ||||| | ||||||||||||| ||||||| ||| ||||||||||||| || || 
Sbjct: 295 acctgcggcttgacgatcctcacgctgctgtagaagcgcctgaagtccttcatagcctgc 236

                                                       
Query: 355 tcctcaatctggatcgagcggatggaggacggggtgtcagtctc 398
           ||||| |||||||| ||||||||||||||||||| ||| |||||
Sbjct: 235 tcctcgatctggatggagcggatggaggacggggcgtcggtctc 192

>gb|AY105413.1| Zea mays PCO145509 mRNA sequence
          Length = 1892

 Score =  103 bits (52), Expect = 4e-19
 Identities = 91/104 (87%)
 Strand = Plus / Minus

                                                                        
Query: 295  acctgtggcttcatgatcctcacgctggtgtagaaacgcttgaagtccttcattgcttgt 354
            ||||| ||||| | ||||||||||||| ||||||| ||| ||||||||||||| || || 
Sbjct: 1477 acctgcggcttgacgatcctcacgctgctgtagaagcgcctgaagtccttcatagcctgc 1418

                                                        
Query: 355  tcctcaatctggatcgagcggatggaggacggggtgtcagtctc 398
            ||||| |||||||| ||||||||||||||||||| ||| |||||
Sbjct: 1417 tcctcgatctggatggagcggatggaggacggggcgtcggtctc 1374

>ref|NM_186453.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3222

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                        
Query: 295  acctgtggcttcatgatcctcacgctggtgtagaaacgcttgaagtccttcattgcttgt 354
            ||||||||||| |  ||||||||| || | ||||| ||||||||||||||||| || || 
Sbjct: 3215 acctgtggcttgacaatcctcacgttgctatagaagcgcttgaagtccttcatcgcctgc 3156

                                            
Query: 355  tcctcaatctggatcgagcggatggaggacgg 386
            || ||||||||||||||||| || ||||||||
Sbjct: 3155 tcttcaatctggatcgagcgaatcgaggacgg 3124

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 79/92 (85%)
 Strand = Plus / Plus

                                                                           
Query: 295     acctgtggcttcatgatcctcacgctggtgtagaaacgcttgaagtccttcattgcttgt 354
               ||||||||||| |  ||||||||| || | ||||| ||||||||||||||||| || || 
Sbjct: 3524605 acctgtggcttgacaatcctcacgttgctatagaagcgcttgaagtccttcatcgcctgc 3524664

                                               
Query: 355     tcctcaatctggatcgagcggatggaggacgg 386
               || ||||||||||||||||| || ||||||||
Sbjct: 3524665 tcttcaatctggatcgagcgaatcgaggacgg 3524696



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 191     gaaactgactgtacacttgaatgtacattg 220
               ||||||||||||||| ||||||||||||||
Sbjct: 3524494 gaaactgactgtacatttgaatgtacattg 3524523

>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0039H02
          Length = 169162

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 79/92 (85%)
 Strand = Plus / Plus

                                                                         
Query: 295   acctgtggcttcatgatcctcacgctggtgtagaaacgcttgaagtccttcattgcttgt 354
             ||||||||||| |  ||||||||| || | ||||| ||||||||||||||||| || || 
Sbjct: 62555 acctgtggcttgacaatcctcacgttgctatagaagcgcttgaagtccttcatcgcctgc 62614

                                             
Query: 355   tcctcaatctggatcgagcggatggaggacgg 386
             || ||||||||||||||||| || ||||||||
Sbjct: 62615 tcttcaatctggatcgagcgaatcgaggacgg 62646



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 191   gaaactgactgtacacttgaatgtacattg 220
             ||||||||||||||| ||||||||||||||
Sbjct: 62444 gaaactgactgtacatttgaatgtacattg 62473

>emb|AL663032.9| Mouse DNA sequence from clone RP23-27I6 on chromosome X, complete
             sequence
          Length = 162995

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 5     acctcctgtctttcttattcct 26
             ||||||||||||||||||||||
Sbjct: 61185 acctcctgtctttcttattcct 61206

>gb|AC024361.21| Homo sapiens chromosome 17, clone RP11-388C12, complete sequence
          Length = 111473

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 231   gacaagcctaaacaagatgac 251
             |||||||||||||||||||||
Sbjct: 53120 gacaagcctaaacaagatgac 53100

>gb|AC068014.16| Homo sapiens chromosome 17, clone RP11-567O16, complete sequence
          Length = 148509

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    gacaagcctaaacaagatgac 251
              |||||||||||||||||||||
Sbjct: 120498 gacaagcctaaacaagatgac 120518

>gb|AC132453.3| Mus musculus BAC clone RP23-200J18 from 6, complete sequence
          Length = 206248

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 267    cgaggccattccacggcagtt 287
              |||||||||||||||||||||
Sbjct: 127718 cgaggccattccacggcagtt 127698

>gb|AC161268.5| Mus musculus BAC clone RP23-198F11 from chromosome 16, complete sequence
          Length = 212995

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     ctttcttattcctcttgtaa 33
              ||||||||||||||||||||
Sbjct: 209487 ctttcttattcctcttgtaa 209468

>gb|AC160987.4| Mus musculus BAC clone RP23-248O24 from chromosome 16, complete sequence
          Length = 202729

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     ctttcttattcctcttgtaa 33
              ||||||||||||||||||||
Sbjct: 100318 ctttcttattcctcttgtaa 100337

>gb|AC159829.10| Mus musculus 10 BAC RP23-269H11 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 189452

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   ttctgctacgaaaaatgaaa 140
             ||||||||||||||||||||
Sbjct: 55192 ttctgctacgaaaaatgaaa 55211

>gb|AC004853.1| Homo sapiens PAC clone RP4-669B10 from 7, complete sequence
          Length = 129355

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   cacttgaatgtacattggaa 223
             ||||||||||||||||||||
Sbjct: 40761 cacttgaatgtacattggaa 40742

>gb|AC145475.1| Pan troglodytes BAC clone RP43-34K7 from 7, complete sequence
          Length = 136914

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    tgtctttcttattcctcttg 30
             ||||||||||||||||||||
Sbjct: 81990 tgtctttcttattcctcttg 82009

>gb|AC142288.1| Pan troglodytes BAC clone RP43-178D12 from 7, complete sequence
          Length = 187294

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     tgtctttcttattcctcttg 30
              ||||||||||||||||||||
Sbjct: 179397 tgtctttcttattcctcttg 179378

>emb|AL592205.4| Human DNA sequence from clone RP11-184D20 on chromosome 1, complete
             sequence
          Length = 127824

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    tgtctttcttattcctcttg 30
             ||||||||||||||||||||
Sbjct: 89092 tgtctttcttattcctcttg 89111

>emb|AL135778.9| Human DNA sequence from clone RP1-119C5 on chromosome 6 Contains the 5'
              end of the BMP6 gene for bone morphogenetic protein 6 and a
              CpG island, complete sequence
          Length = 152786

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 235    agcctaaacaagatgaccaa 254
              ||||||||||||||||||||
Sbjct: 122505 agcctaaacaagatgaccaa 122486

>emb|AL031733.3|HS455J7 Human DNA sequence from clone RP3-455J7 on chromosome 1q24 Contains
            the 5' end of the CD3Z gene for CD3Z antigen zeta
            polypeptide (TiT3 complex), an aldo-keto reductase family
            1 member D1 (delta 4-3-ketosteroid-5-beta-reductase)
            (AKR1D1) pseudogene, the CREG gene for cellular repressor
            of E1A-stimulated genes, a ribosomal protein S18 (RPS18)
            pseudogene, a novel gene, the 5' end of the gene for a
            novel protein and a CpG island, complete sequence
          Length = 215861

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 348  tgcttgttcctcaatctgga 367
            ||||||||||||||||||||
Sbjct: 9730 tgcttgttcctcaatctgga 9749

>gb|AC009262.5| Homo sapiens chromosome 7 clone RP11-179B11, complete sequence
          Length = 149255

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    tgtctttcttattcctcttg 30
             ||||||||||||||||||||
Sbjct: 25989 tgtctttcttattcctcttg 25970

>gb|AC005686.1|AC005686 Homo sapiens clone GS1-234F24 from 7p14-15, complete sequence
          Length = 141387

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    tgtctttcttattcctcttg 30
             ||||||||||||||||||||
Sbjct: 73825 tgtctttcttattcctcttg 73844

>gb|AC010674.11| Homo sapiens chromosome 15 clone RP11-430B1 map 15q21.1, complete
             sequence
          Length = 214415

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   cacttgaatgtacattggaa 223
             ||||||||||||||||||||
Sbjct: 18899 cacttgaatgtacattggaa 18880

>gb|AC034257.3|AC034257 Arabidopsis thaliana chromosome I BAC F11A6 genomic sequence, complete
             sequence
          Length = 98950

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 117   tgatttctgctacgaaaaatgaaa 140
             |||||||||||| |||||||||||
Sbjct: 72917 tgatttctgctaagaaaaatgaaa 72894

>dbj|AK130755.1| Homo sapiens cDNA FLJ27245 fis, clone SYN08243
          Length = 2109

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 348  tgcttgttcctcaatctgga 367
            ||||||||||||||||||||
Sbjct: 2097 tgcttgttcctcaatctgga 2078

>gb|AY104914.1| Zea mays PCO133651 mRNA sequence
          Length = 1441

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 ttggaacgggagggacaagc 237
           ||||||||||||||||||||
Sbjct: 156 ttggaacgggagggacaagc 137

>gb|AC157476.2| Mus musculus BAC clone RP24-174O15 from chromosome 9, complete sequence
          Length = 161849

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    taaaggttgccaaagttcaa 73
             ||||||||||||||||||||
Sbjct: 47066 taaaggttgccaaagttcaa 47085


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,367,754
Number of Sequences: 3902068
Number of extensions: 3367754
Number of successful extensions: 61986
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61919
Number of HSP's gapped (non-prelim): 67
length of query: 401
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 379
effective length of database: 17,147,199,772
effective search space: 6498788713588
effective search space used: 6498788713588
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)