ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl47h07 |
|---|---|
| Clone Library Name | barley_pub |
>ALG14_ASPFU (Q4WNB5) UDP-N-acetylglucosamine transferase subunit alg14 (EC| 2.4.1.-) (Asparagine linked glycosylation protein 14) Length = 228 Score = 31.2 bits (69), Expect = 0.65 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = -3 Query: 326 NRFLVSWPDLLSRQAGRGIQ 267 +RFLV WPDL +QA RG++ Sbjct: 199 DRFLVQWPDLAGKQAWRGMR 218
>YJBC_SCHPO (O74949) Hypothetical protein C553.12c in chromosome III| Length = 521 Score = 30.8 bits (68), Expect = 0.85 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Frame = -1 Query: 178 WTHSLFPNSVVNCCCCKIRRNSSVIICWSFS--VASVCLYVLMWR*AELIYMMMLWYNLV 5 W LF VN C K+ + I+ W FS V S+ +Y WR ++ +++ +++ Sbjct: 154 WITKLFHIYSVNWCPSKLGGTITYILFWMFSLLVGSLVVYFTAWRQITFTWITLMFISMI 213
>GUSL3_HUMAN (Q15487) Beta-glucuronidase-like protein SMA4| Length = 140 Score = 30.8 bits (68), Expect = 0.85 Identities = 16/28 (57%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = -3 Query: 215 LLVWERG-CVHQSLDPLPFPQFCSQLLL 135 L WE G C HQSL PLP C QL L Sbjct: 75 LYSWEDGDCSHQSLGPLPACDLCDQLHL 102
>GUSL2_HUMAN (Q15486) Beta-glucuronidase-like protein SMA3| Length = 140 Score = 30.8 bits (68), Expect = 0.85 Identities = 16/28 (57%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = -3 Query: 215 LLVWERG-CVHQSLDPLPFPQFCSQLLL 135 L WE G C HQSL PLP C QL L Sbjct: 75 LYSWEDGDCSHQSLGPLPACDLCDQLHL 102
>GUSL1_HUMAN (Q9NQQ0) Beta-glucuronidase-like protein 1 (SMA3-like protein)| Length = 140 Score = 30.8 bits (68), Expect = 0.85 Identities = 16/28 (57%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = -3 Query: 215 LLVWERG-CVHQSLDPLPFPQFCSQLLL 135 L WE G C HQSL PLP C QL L Sbjct: 75 LYSWEDGDCSHQSLGPLPACDLCDQLHL 102
>TTBK2_HUMAN (Q6IQ55) Tau-tubulin kinase 2 (EC 2.7.11.1)| Length = 1244 Score = 30.0 bits (66), Expect = 1.5 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Frame = +3 Query: 108 TEEFLRI-LQQQQLTTELGKREWVQALMNTPSFPH*QLSPLYIHYIRAALQSPSLYASAR 284 T++FL L++ Q T GK + AL++ P P + HY L S ASA Sbjct: 463 TDKFLETCLEKMQKDTSAGKESILPALLHKPCVPAVSRTDHIWHYDEEYLPDASKPASAN 522 Query: 285 LPRQ 296 P Q Sbjct: 523 TPEQ 526
>GUAA_PROM9 (Q31DE7) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 528 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/42 (28%), Positives = 27/42 (64%) Frame = +3 Query: 15 YHNIIMYISSAQRHISTYKHTDATEKLQQMMTEEFLRILQQQ 140 +H + YI++ +R IS K E+ ++++ EEF+R+ +++ Sbjct: 278 FHIKVEYINARERFISKLKGITDPEQKRKIIGEEFIRVFEEE 319
>PTN11_RAT (P41499) Tyrosine-protein phosphatase non-receptor type 11 (EC| 3.1.3.48) (Protein-tyrosine phosphatase SYP) (PTP-1D) (SH-PTP2) (SHP-2) (Shp2) Length = 597 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +1 Query: 205 HTNNCHLYIYITSGQRYKAPPCMPLPACLDRR 300 +TN + + TSG + PPC P P C + R Sbjct: 546 YTNIKYSLVDQTSGDQSPLPPCTPTPPCAEMR 577
>PTN11_MOUSE (P35235) Tyrosine-protein phosphatase non-receptor type 11 (EC| 3.1.3.48) (Protein-tyrosine phosphatase SYP) (SH-PTP2) (SHP-2) (Shp2) Length = 597 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +1 Query: 205 HTNNCHLYIYITSGQRYKAPPCMPLPACLDRR 300 +TN + + TSG + PPC P P C + R Sbjct: 546 YTNIKYSLVDQTSGDQSPLPPCTPTPPCAEMR 577
>RGYR1_AQUAE (O67037) Reverse gyrase 1 [Includes: Helicase (EC 3.6.1.-);| Topoisomerase (EC 5.99.1.3)] Length = 1146 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +3 Query: 66 YKHTDATEKLQQMMTEEFLRILQQQQLTTELGKREWVQAL 185 Y+ + EK+ ++EEF R L++ E GK +++Q L Sbjct: 1092 YEFLKSREKIMPFVSEEFTRKLEELMDKVEEGKEDYLQVL 1131
>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-) (Germline| helicase 4) Length = 1156 Score = 28.5 bits (62), Expect = 4.2 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +2 Query: 158 GEKGVGPGSDEHTLFPTLTIVTSIYTLHQGSATKPLPVCLCPPASTEGPATKQENG 325 G G PG+ E + FPT TS T G KP P++T+ + +Q G Sbjct: 353 GIGGQKPGATESSGFPTKETSTSGGTFGSGFGGKPTSTGFGAPSTTDSSSGQQTAG 408
>BMP8A_HUMAN (Q7Z5Y6) Bone morphogenetic protein 8A precursor (BMP-8A)| Length = 402 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/62 (24%), Positives = 28/62 (45%) Frame = -1 Query: 271 YREGLCSAALM*CIYRGDNC*CGKEGVFIRAWTHSLFPNSVVNCCCCKIRRNSSVIICWS 92 Y EG CS L D+C +++ H + PN+V CC + +++ ++ + Sbjct: 329 YCEGECSFPL-------DSCMNATNHAILQSLVHLMKPNAVPKACCAPTKLSATSVLYYD 381 Query: 91 FS 86 S Sbjct: 382 SS 383
>GUAA_PROMT (Q46I26) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 528 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/40 (27%), Positives = 25/40 (62%) Frame = +3 Query: 27 IMYISSAQRHISTYKHTDATEKLQQMMTEEFLRILQQQQL 146 + YI++ +R IS K E+ ++++ EF+R+ +++ L Sbjct: 282 VEYINARERFISQLKGVTDPEQKRKIIGREFIRVFEEESL 321
>GUAA_PROMM (Q7V9A9) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 528 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/42 (28%), Positives = 26/42 (61%) Frame = +3 Query: 15 YHNIIMYISSAQRHISTYKHTDATEKLQQMMTEEFLRILQQQ 140 +H + YI++ QR IS K E+ ++++ EF+R+ +++ Sbjct: 278 FHINVEYINARQRFISKLKGIIDPEEKRKIIGTEFIRVFEEE 319
>SOS_DROME (P26675) Protein son of sevenless| Length = 1596 Score = 28.1 bits (61), Expect = 5.5 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = -2 Query: 228 IEVTIVSVGKRVCSSEPGPTPFSPIL*SIVVVVKSAEILQSSSAGVSPLHPCV 70 I T+V+V + V + EP P P SP SSS SPL P + Sbjct: 1447 ISTTLVTVSQAVATDEPLPLPISP--------------AASSSTTTSPLTPAM 1485
>RPOC2_GUITH (O78483) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1286 Score = 27.7 bits (60), Expect = 7.2 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 4/108 (3%) Frame = +3 Query: 36 ISSAQRHISTYKHTDATEKLQQMMTEEFLR---ILQQQQLTTELGKREWV-QALMNTPSF 203 +S I+T D TE +Q + T+ + I Q+L G+ + + L + Sbjct: 1001 LSQKPGKINTTNSNDETEVIQLIDTDGYTTDYIINNNQKLIISNGENVLLAEPLTDGAPN 1060 Query: 204 PH*QLSPLYIHYIRAALQSPSLYASARLPRQKVRPRNKKTVHRRYRSK 347 PH L+ LY ++ + + +LY SA+L QKV+ V + Y+S+ Sbjct: 1061 PHEMLN-LYFNFYTSII---TLYESAKLSLQKVQTYLVDEVQKVYQSQ 1104
>PTN11_HUMAN (Q06124) Tyrosine-protein phosphatase non-receptor type 11 (EC| 3.1.3.48) (Protein-tyrosine phosphatase 2C) (PTP-2C) (PTP-1D) (SH-PTP3) (SH-PTP2) (SHP-2) (Shp2) Length = 597 Score = 27.7 bits (60), Expect = 7.2 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +1 Query: 238 TSGQRYKAPPCMPLPACLDRR 300 TSG + PPC P P C + R Sbjct: 557 TSGDQSPLPPCTPTPPCAEMR 577
>RB3GP_XENLA (Q642R9) Rab3 GTPase-activating protein catalytic subunit| Length = 978 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/56 (28%), Positives = 25/56 (44%) Frame = -3 Query: 191 VHQSLDPLPFPQFCSQLLLL*NPQKFFSHHLLEFLRCIRVFVCADVALSRANIHDD 24 V+ LDPL PQ+ ++ NPQ + EF R R D L ++ ++ Sbjct: 297 VYSDLDPLQAPQWSVRVRKADNPQCMLGDFVSEFFRLCRRKESTDELLGKSAFEEN 352
>RB3GP_MOUSE (Q80UJ7) Rab3 GTPase-activating protein catalytic subunit (RAB3| GTPase-activating protein 130 kDa subunit) (Rab3-GAP p130) (Rab3-GAP) Length = 980 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/56 (26%), Positives = 25/56 (44%) Frame = -3 Query: 191 VHQSLDPLPFPQFCSQLLLL*NPQKFFSHHLLEFLRCIRVFVCADVALSRANIHDD 24 V+ LDP+ P + ++ NPQ + EFL+ R D L R+ ++ Sbjct: 297 VYSDLDPVQAPHWSVRVRKADNPQCLLGDFVTEFLKICRRKESTDEILGRSTFEEE 352
>GALT8_DROME (Q9VUT6) Polypeptide N-acetylgalactosaminyltransferase 8 (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 8) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 8) (pp-GaNTase 8) Length = 590 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/29 (37%), Positives = 20/29 (68%) Frame = +3 Query: 75 TDATEKLQQMMTEEFLRILQQQQLTTELG 161 T A EKL + +FL ++Q +++TT++G Sbjct: 171 TQADEKLNDFIKIKFLNMVQHRRITTQVG 199
>RB3GP_RAT (P69735) Rab3 GTPase-activating protein catalytic subunit (RAB3| GTPase-activating protein 130 kDa subunit) (Rab3-GAP p130) (Rab3-GAP) (Fragments) Length = 774 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/56 (26%), Positives = 25/56 (44%) Frame = -3 Query: 191 VHQSLDPLPFPQFCSQLLLL*NPQKFFSHHLLEFLRCIRVFVCADVALSRANIHDD 24 V+ LDP+ P + ++ NPQ + EFL+ R D L R+ ++ Sbjct: 92 VYSDLDPVQAPHWSVRVRKADNPQCLLGDFVTEFLKICRRKESTDEILGRSTFEEE 147
>GPMI_NATPD (Q3IS17) 2,3-bisphosphoglycerate-independent phosphoglycerate| mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (iPGM) Length = 506 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/32 (34%), Positives = 16/32 (50%) Frame = +2 Query: 239 HQGSATKPLPVCLCPPASTEGPATKQENGSSA 334 H T P+P C P T+G T ++ G+ A Sbjct: 449 HTAHTTNPVPFVYCTPDGTDGGYTVRDGGTLA 480
>MRTFB_XENLA (Q8AYC1) Myocardin-related transcription factor B (MRTF-B)| (xMRTF-B) Length = 1067 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = +3 Query: 87 EKLQQMMTEEFLRILQQQQLTTEL 158 EK+++ M + R+LQQQQL +L Sbjct: 301 EKIEEEMDSNYARLLQQQQLVLQL 324
>YIJD_ECOLI (P0AF40) Inner membrane protein yijD| Length = 119 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/28 (35%), Positives = 19/28 (67%) Frame = +2 Query: 194 TLFPTLTIVTSIYTLHQGSATKPLPVCL 277 ++FP +++V ++Y LHQ + +PV L Sbjct: 36 SVFPIISLVLTVYCLHQRYLNRTMPVGL 63
>YIJD_ECOL6 (P0AF41) Inner membrane protein yijD| Length = 119 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/28 (35%), Positives = 19/28 (67%) Frame = +2 Query: 194 TLFPTLTIVTSIYTLHQGSATKPLPVCL 277 ++FP +++V ++Y LHQ + +PV L Sbjct: 36 SVFPIISLVLTVYCLHQRYLNRTMPVGL 63
>YIJD_ECO57 (P0AF42) Inner membrane protein yijD| Length = 119 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/28 (35%), Positives = 19/28 (67%) Frame = +2 Query: 194 TLFPTLTIVTSIYTLHQGSATKPLPVCL 277 ++FP +++V ++Y LHQ + +PV L Sbjct: 36 SVFPIISLVLTVYCLHQRYLNRTMPVGL 63
>BMP8B_HUMAN (P34820) Bone morphogenetic protein 8B precursor (BMP-8B) (BMP-8)| (Osteogenic protein 2) (OP-2) Length = 402 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/62 (22%), Positives = 28/62 (45%) Frame = -1 Query: 271 YREGLCSAALM*CIYRGDNC*CGKEGVFIRAWTHSLFPNSVVNCCCCKIRRNSSVIICWS 92 Y EG CS L D+C +++ H + P++V CC + +++ ++ + Sbjct: 329 YCEGECSFPL-------DSCMNATNHAILQSLVHLMMPDAVPKACCAPTKLSATSVLYYD 381 Query: 91 FS 86 S Sbjct: 382 SS 383
>GUAA_SYNPX (Q7UA53) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 528 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/44 (27%), Positives = 27/44 (61%) Frame = +3 Query: 9 RLYHNIIMYISSAQRHISTYKHTDATEKLQQMMTEEFLRILQQQ 140 R ++ + YI++ QR IS K E+ ++++ EF+R+ +++ Sbjct: 276 RKFNIHVEYINARQRFISKLKGITDPEEKRKIIGTEFIRVFEEE 319
>PTN11_CHICK (Q90687) Tyrosine-protein phosphatase non-receptor type 11 (EC| 3.1.3.48) (cSH-PTP2) Length = 593 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +1 Query: 238 TSGQRYKAPPCMPLPACLDRR 300 TSG + PPC P P C + R Sbjct: 553 TSGDQSPLPPCTPTPTCPEMR 573 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,398,502 Number of Sequences: 219361 Number of extensions: 1273646 Number of successful extensions: 3401 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3285 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3395 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
