ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl47h05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_639988.1| Dictyostelium discoideum hypothetical protein (DDB0168011), partial mRNA Length = 4611 Score = 42.1 bits (21), Expect = 0.72 Identities = 27/29 (93%) Strand = Plus / Plus Query: 166 atcatccaaaagaggcagcaattacaaca 194 ||||||||||||| |||| |||||||||| Sbjct: 494 atcatccaaaagatgcagaaattacaaca 522
>ref|XM_639242.1| Dictyostelium discoideum hypothetical protein (DDB0217388), partial mRNA Length = 4611 Score = 42.1 bits (21), Expect = 0.72 Identities = 27/29 (93%) Strand = Plus / Plus Query: 166 atcatccaaaagaggcagcaattacaaca 194 ||||||||||||| |||| |||||||||| Sbjct: 494 atcatccaaaagatgcagaaattacaaca 522
>gb|AC096588.1| Homo sapiens BAC clone RP11-725D20 from 4, complete sequence Length = 150864 Score = 42.1 bits (21), Expect = 0.72 Identities = 24/25 (96%) Strand = Plus / Plus Query: 46 acagaaaaacatgggaaggaactca 70 ||||||||||||| ||||||||||| Sbjct: 93457 acagaaaaacatgagaaggaactca 93481
>emb|BX682233.6| Zebrafish DNA sequence from clone CH211-177P5 in linkage group 16, complete sequence Length = 145536 Score = 42.1 bits (21), Expect = 0.72 Identities = 24/25 (96%) Strand = Plus / Plus Query: 84 agaacaaaagcatcacaaccaatat 108 ||||||||||||||||||| ||||| Sbjct: 40528 agaacaaaagcatcacaactaatat 40552
>gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence Length = 541399 Score = 42.1 bits (21), Expect = 0.72 Identities = 27/29 (93%) Strand = Plus / Minus Query: 166 atcatccaaaagaggcagcaattacaaca 194 ||||||||||||| |||| |||||||||| Sbjct: 178831 atcatccaaaagatgcagaaattacaaca 178803
>emb|AL844887.10| Zebrafish DNA sequence from clone DKEY-66C10, complete sequence Length = 243870 Score = 42.1 bits (21), Expect = 0.72 Identities = 24/25 (96%) Strand = Plus / Plus Query: 84 agaacaaaagcatcacaaccaatat 108 ||||||||||||||||||| ||||| Sbjct: 17970 agaacaaaagcatcacaactaatat 17994
>emb|AL954832.12| Zebrafish DNA sequence from clone DKEY-15O4, complete sequence Length = 256126 Score = 42.1 bits (21), Expect = 0.72 Identities = 24/25 (96%) Strand = Plus / Plus Query: 84 agaacaaaagcatcacaaccaatat 108 ||||||||||||||||||| ||||| Sbjct: 208905 agaacaaaagcatcacaactaatat 208929
>gb|AC150424.3| Branchiostoma floridae clone CH302-7J16, complete sequence Length = 154657 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 aaaaagatatgtacagaaaa 53 |||||||||||||||||||| Sbjct: 28955 aaaaagatatgtacagaaaa 28936
>gb|AC163036.2| Mus musculus BAC clone RP23-219G12 from chromosome 17, complete sequence Length = 217187 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 tgtacagaaaaacatgggaaggaa 66 ||||||||| |||||||||||||| Sbjct: 120123 tgtacagaagaacatgggaaggaa 120100
>gb|BC073354.1| Xenopus laevis similar to Hermansky-Pudlak syndrome 3, mRNA (cDNA clone MGC:80771 IMAGE:5512777), complete cds Length = 3361 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 gaactcatagcagcattcagagaa 87 ||||| |||||||||||||||||| Sbjct: 1829 gaactaatagcagcattcagagaa 1852
>gb|BC041292.1| Xenopus laevis similar to Hermansky-Pudlak syndrome 3, mRNA (cDNA clone IMAGE:4682613), partial cds Length = 1593 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 gaactcatagcagcattcagagaa 87 ||||| |||||||||||||||||| Sbjct: 67 gaactaatagcagcattcagagaa 90
>gb|AC146683.11| Medicago truncatula clone mth2-179n10, complete sequence Length = 131133 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 atgaaaaaagatatgtacagaaaa 53 ||||||||||||||||| |||||| Sbjct: 74940 atgaaaaaagatatgtatagaaaa 74917
>gb|AY190950.1| Drosophila willistoni clone DWIF01_1_E5 (D1417) genomic sequence Length = 40487 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 cagcattcagagaacaaaag 93 |||||||||||||||||||| Sbjct: 11828 cagcattcagagaacaaaag 11809 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,331,976 Number of Sequences: 3902068 Number of extensions: 2331976 Number of successful extensions: 185380 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 185347 Number of HSP's gapped (non-prelim): 33 length of query: 224 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 202 effective length of database: 17,147,199,772 effective search space: 3463734353944 effective search space used: 3463734353944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
