>Y1688_HALSA (Q06847) Hypothetical protein Vng1688c|
          Length = 283

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +1

Query: 124 GGQVYSVFCEIASPNLRKSSASDALDELAQDGALAPLRLT 243
           GG V +V    A+P   +  A D  DELA  G L PLRL+
Sbjct: 54  GGFVETVLRYAATPPYLRKEAFDTRDELAYAGVLPPLRLS 93

>TIM21_GIBZE (Q4HZ95) Import inner membrane translocase subunit TIM21,|
           mitochondrial precursor
          Length = 229

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = +1

Query: 1   GQKRSIFTVNRASPQIQWPLLFFKTISENATLQSASW------MGLSGGQVYSVFCEIAS 162
           G KR   T    +  + W  L     +  AT QS ++      + L+GG  Y ++ ++ S
Sbjct: 43  GPKRRAVTPFNDNGHVPWKQLSVAEKAARATQQSFNFGMILVGLMLTGGVGYFLWTDVFS 102

Query: 163 PNLRKSSASDALDELAQD 216
           P+ + S+ + A+D++  D
Sbjct: 103 PDSKISNFNRAVDKIRSD 120

>CNN_DROME (P54623) Centrosomin (Protein arrow)|
          Length = 1320

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 261  ELRERVCQPERRQRPVLCQLVERVRRGALPQVRRGDLTE 145
            +L E++ Q + R   V CQ+VE   R    Q+R  D+T+
Sbjct: 898  QLEEQIAQKDERMLNVQCQMVELDNRYKQEQLRCLDITQ 936

>YO128_YEAST (Q08281) WD-repeat protein YOL138C|
          Length = 1341

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +1

Query: 16  IFTVNRASPQIQWPLLFFKTISENATLQSASWMGLSGGQVYSVFCEIAS-----PNLRKS 180
           IF +++ +    W +    T+ EN +  + +W  L G  + SV  EI S     P L+ +
Sbjct: 505 IFNIDKGTRINGWDINKEPTVLENLSKNTTTWRDLDGNGLLSVGQEIGSYEVVEPELQPT 564

Query: 181 SAS 189
           S++
Sbjct: 565 SST 567

>MBTP1_RAT (Q9WTZ3) Membrane-bound transcription factor site 1 protease|
           precursor (EC 3.4.21.-) (S1P endopeptidase) (Site-1
           protease) (Subtilisin/kexin isozyme 1) (SKI-1)
          Length = 1052

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 46  IQWPLLFFKTISENATLQSASWMGLSGGQVYSVFCEIASPNLRKSS 183
           + WP   +  IS + T ++ASW G++ G +       A   L+  +
Sbjct: 554 VLWPWSGYLAISISVTKKAASWEGIAQGHIMITVASPAETELKNGA 599

>MBTP1_HUMAN (Q14703) Membrane-bound transcription factor site 1 protease|
           precursor (EC 3.4.21.-) (S1P endopeptidase) (Site-1
           protease) (Subtilisin/kexin-isozyme 1) (SKI-1)
          Length = 1052

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 46  IQWPLLFFKTISENATLQSASWMGLSGGQVYSVFCEIASP 165
           + WP   +  IS + T ++ASW G++ G    V   +ASP
Sbjct: 554 VLWPWSGYLAISISVTKKAASWEGIAQGH---VMITVASP 590


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,743,099
Number of Sequences: 219361
Number of extensions: 519790
Number of successful extensions: 1515
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)