Clone Name | rbastl47h04 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_468076.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1688 Score = 113 bits (57), Expect = 3e-22 Identities = 123/145 (84%) Strand = Plus / Minus Query: 134 tctactctgtgttctgtgagatcgcctcgccgaacttgaggaagagctccgcgtcggacg 193 ||||||||||||||||||| ||| ||||||||||||| |||||||||||||| || |||| Sbjct: 1346 tctactctgtgttctgtgatatcacctcgccgaacttcaggaagagctccgcatctgacg 1287 Query: 194 cgctcgacgagttggcacaggacggggcgctggcgcctctcaggctgacatactcgttca 253 |||||||||| || ||||||| | | |||| |||||| ||||| || |||||||| | Sbjct: 1286 cgctcgacgaattttcacaggagagcgtgctgccgcctcgtaggctcacgtactcgttga 1227 Query: 254 cgtagctcggggccggggacgactg 278 | |||||||| ||| ||||||||| Sbjct: 1226 catagctcggaaccgtggacgactg 1202
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 113 bits (57), Expect = 3e-22 Identities = 123/145 (84%) Strand = Plus / Minus Query: 134 tctactctgtgttctgtgagatcgcctcgccgaacttgaggaagagctccgcgtcggacg 193 ||||||||||||||||||| ||| ||||||||||||| |||||||||||||| || |||| Sbjct: 32907891 tctactctgtgttctgtgatatcacctcgccgaacttcaggaagagctccgcatctgacg 32907832 Query: 194 cgctcgacgagttggcacaggacggggcgctggcgcctctcaggctgacatactcgttca 253 |||||||||| || ||||||| | | |||| |||||| ||||| || |||||||| | Sbjct: 32907831 cgctcgacgaattttcacaggagagcgtgctgccgcctcgtaggctcacgtactcgttga 32907772 Query: 254 cgtagctcggggccggggacgactg 278 | |||||||| ||| ||||||||| Sbjct: 32907771 catagctcggaaccgtggacgactg 32907747
>dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1534_E09 Length = 126209 Score = 113 bits (57), Expect = 3e-22 Identities = 123/145 (84%) Strand = Plus / Minus Query: 134 tctactctgtgttctgtgagatcgcctcgccgaacttgaggaagagctccgcgtcggacg 193 ||||||||||||||||||| ||| ||||||||||||| |||||||||||||| || |||| Sbjct: 62632 tctactctgtgttctgtgatatcacctcgccgaacttcaggaagagctccgcatctgacg 62573 Query: 194 cgctcgacgagttggcacaggacggggcgctggcgcctctcaggctgacatactcgttca 253 |||||||||| || ||||||| | | |||| |||||| ||||| || |||||||| | Sbjct: 62572 cgctcgacgaattttcacaggagagcgtgctgccgcctcgtaggctcacgtactcgttga 62513 Query: 254 cgtagctcggggccggggacgactg 278 | |||||||| ||| ||||||||| Sbjct: 62512 catagctcggaaccgtggacgactg 62488
>dbj|AK060260.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-H01, full insert sequence Length = 1688 Score = 113 bits (57), Expect = 3e-22 Identities = 123/145 (84%) Strand = Plus / Minus Query: 134 tctactctgtgttctgtgagatcgcctcgccgaacttgaggaagagctccgcgtcggacg 193 ||||||||||||||||||| ||| ||||||||||||| |||||||||||||| || |||| Sbjct: 1346 tctactctgtgttctgtgatatcacctcgccgaacttcaggaagagctccgcatctgacg 1287 Query: 194 cgctcgacgagttggcacaggacggggcgctggcgcctctcaggctgacatactcgttca 253 |||||||||| || ||||||| | | |||| |||||| ||||| || |||||||| | Sbjct: 1286 cgctcgacgaattttcacaggagagcgtgctgccgcctcgtaggctcacgtactcgttga 1227 Query: 254 cgtagctcggggccggggacgactg 278 | |||||||| ||| ||||||||| Sbjct: 1226 catagctcggaaccgtggacgactg 1202
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 77.8 bits (39), Expect = 2e-11 Identities = 108/131 (82%) Strand = Plus / Plus Query: 134 tctactctgtgttctgtgagatcgcctcgccgaacttgaggaagagctccgcgtcggacg 193 |||||||||||||||| || || ||||||| |||||||| || ||||| || ||||| | Sbjct: 5255421 tctactctgtgttctgagaaatgacctcgccaaacttgagaaacagctcagcatcggaag 5255480 Query: 194 cgctcgacgagttggcacaggacggggcgctggcgcctctcaggctgacatactcgttca 253 | |||||||||||| ||||| | |||||| |||||| | ||||||||||||||| | Sbjct: 5255481 tacacgacgagttggcgcaggagagcacgctggtgcctcttaagctgacatactcgttga 5255540 Query: 254 cgtagctcggg 264 |||||||||| Sbjct: 5255541 tgtagctcggg 5255551
>dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016O19 Length = 169120 Score = 77.8 bits (39), Expect = 2e-11 Identities = 108/131 (82%) Strand = Plus / Plus Query: 134 tctactctgtgttctgtgagatcgcctcgccgaacttgaggaagagctccgcgtcggacg 193 |||||||||||||||| || || ||||||| |||||||| || ||||| || ||||| | Sbjct: 122143 tctactctgtgttctgagaaatgacctcgccaaacttgagaaacagctcagcatcggaag 122202 Query: 194 cgctcgacgagttggcacaggacggggcgctggcgcctctcaggctgacatactcgttca 253 | |||||||||||| ||||| | |||||| |||||| | ||||||||||||||| | Sbjct: 122203 tacacgacgagttggcgcaggagagcacgctggtgcctcttaagctgacatactcgttga 122262 Query: 254 cgtagctcggg 264 |||||||||| Sbjct: 122263 tgtagctcggg 122273
>dbj|AK073793.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070P05, full insert sequence Length = 3673 Score = 77.8 bits (39), Expect = 2e-11 Identities = 108/131 (82%) Strand = Plus / Minus Query: 134 tctactctgtgttctgtgagatcgcctcgccgaacttgaggaagagctccgcgtcggacg 193 |||||||||||||||| || || ||||||| |||||||| || ||||| || ||||| | Sbjct: 3308 tctactctgtgttctgagaaatgacctcgccaaacttgagaaacagctcagcatcggaag 3249 Query: 194 cgctcgacgagttggcacaggacggggcgctggcgcctctcaggctgacatactcgttca 253 | |||||||||||| ||||| | |||||| |||||| | ||||||||||||||| | Sbjct: 3248 tacacgacgagttggcgcaggagagcacgctggtgcctcttaagctgacatactcgttga 3189 Query: 254 cgtagctcggg 264 |||||||||| Sbjct: 3188 tgtagctcggg 3178
>gb|AF466199.1| Sorghum bicolor putative receptor protein kinase, aminoalcoholphosphotransferase, putative growth-regulating factor 1, putative GAG-POL precursor, putative GAG-POL precursor, putative RIRE2 orf3, putative anthocyanin regulatory C1, putative protein T30F21.6, putative copia polyprotein, putative copia polyprotein, putative protein NP_196765.1, and gb protein genes, complete cds; and putative zinc finger protein gene, partial cds Length = 144159 Score = 75.8 bits (38), Expect = 7e-11 Identities = 98/118 (83%) Strand = Plus / Plus Query: 143 tgttctgtgagatcgcctcgccgaacttgaggaagagctccgcgtcggacgcgctcgacg 202 ||||||| ||||| |||||||||||||||||||| ||||| ||||| || | ||| | || Sbjct: 1434 tgttctgcgagatggcctcgccgaacttgaggaacagctcggcgtccgaggtgctggtcg 1493 Query: 203 agttggcacaggacggggcgctggcgcctctcaggctgacatactcgttcacgtagct 260 ||||||| ||||| | |||| || ||| | ||||||||| |||||||| | |||||| Sbjct: 1494 agttggcgcaggagagagcgccggtgccccgcaggctgacgtactcgttgatgtagct 1551
>gb|AY106598.1| Zea mays PCO069596 mRNA sequence Length = 1273 Score = 46.1 bits (23), Expect = 0.063 Identities = 68/83 (81%) Strand = Plus / Minus Query: 168 cttgaggaagagctccgcgtcggacgcgctcgacgagttggcacaggacggggcgctggc 227 ||||||||| ||||| ||||| || | ||| ||||||||||| ||||| |||||| | Sbjct: 1273 cttgaggaacagctcggcgtccgaggtgctggacgagttggcgcaggagagggcgccagt 1214 Query: 228 gcctctcaggctgacatactcgt 250 ||| | ||||||||| ||||||| Sbjct: 1213 gccccgcaggctgacgtactcgt 1191
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 42.1 bits (21), Expect = 0.98 Identities = 27/29 (93%) Strand = Plus / Plus Query: 195 gctcgacgagttggcacaggacggggcgc 223 ||||||| ||||||||||| ||||||||| Sbjct: 564230 gctcgaccagttggcacagaacggggcgc 564258
>gb|AC091607.11| Homo sapiens 3 BAC RP11-118D22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175447 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 ccccaaattcagtggcctctg 60 ||||||||||||||||||||| Sbjct: 93878 ccccaaattcagtggcctctg 93898
>ref|XM_364545.1| Magnaporthe grisea 70-15 hypothetical protein (MG09381.4) partial mRNA Length = 900 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 ccgcgtcggacgcgctcgac 201 |||||||||||||||||||| Sbjct: 353 ccgcgtcggacgcgctcgac 372
>gb|AC125174.3| Mus musculus BAC clone RP24-544G11 from chromosome 16, complete sequence Length = 196646 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gaggtcaagtctactctgtg 144 |||||||||||||||||||| Sbjct: 150225 gaggtcaagtctactctgtg 150244
>gb|AC078896.23| Mus musculus strain C57BL/6J clone rp23-329d14 map 6, complete sequence Length = 170323 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 gggccggggacgactggggc 282 |||||||||||||||||||| Sbjct: 109630 gggccggggacgactggggc 109611
>emb|CR932417.12| Human DNA sequence from clone XX-D_24I13, complete sequence Length = 198202 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gccaaaagagaagcatattt 21 |||||||||||||||||||| Sbjct: 191884 gccaaaagagaagcatattt 191865
>gb|AF502150.1| Vibrio vulnificus cytochrome c-type biogenesis protein CcmF (ccmF) gene, partial cds; thiol:disulfide interchange protein CcmG (ccmG) gene, complete cds; and cytochrome c-type biogenesis protein CcmH (ccmH) gene, partial cds Length = 3031 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 152 agatcgcctcgccgaacttgaggaagag 179 |||||||||| | ||||||||||||||| Sbjct: 2229 agatcgcctctcagaacttgaggaagag 2256
>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence Length = 3354505 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 152 agatcgcctcgccgaacttgaggaagag 179 |||||||||| | ||||||||||||||| Sbjct: 2483960 agatcgcctctcagaacttgaggaagag 2483933
>gb|AC007844.32| Mus musculus strain 129/Sv ES cell line CJ7 chromosome 6 clone ct7-541l22, complete sequence Length = 152316 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 gggccggggacgactggggc 282 |||||||||||||||||||| Sbjct: 26434 gggccggggacgactggggc 26415
>gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete genome Length = 859006 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctatttttcaaaacaattag 80 |||||||||||||||||||| Sbjct: 23989 ctatttttcaaaacaattag 23970
>gb|AC046131.35|AC046131 Homo sapiens 12 BAC RP11-847A19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 111131 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 tggcctctgctatttttcaa 71 |||||||||||||||||||| Sbjct: 73777 tggcctctgctatttttcaa 73796
>gb|AF277399.1|AF277399 Mus musculus cat eye syndrome critical region 6 (Cecr6) mRNA, complete cds Length = 4885 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gggccggggacgactggggc 282 |||||||||||||||||||| Sbjct: 942 gggccggggacgactggggc 961
>ref|NM_072466.2| Caenorhabditis elegans F10G2.1 (F10G2.1) mRNA, complete cds Length = 680 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tttcaaaacaattagcgaaa 85 |||||||||||||||||||| Sbjct: 244 tttcaaaacaattagcgaaa 225
>gb|AC069114.4|AC069114 Homo sapiens chromosome 18, clone RP11-736G13, complete sequence Length = 149144 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gggcatctccccaaattcag 51 |||||||||||||||||||| Sbjct: 6802 gggcatctccccaaattcag 6821
>gb|AC027458.4|AC027458 Homo sapiens chromosome 18, clone RP11-723G8, complete sequence Length = 182495 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 gggcatctccccaaattcag 51 |||||||||||||||||||| Sbjct: 80831 gggcatctccccaaattcag 80812
>gb|AC153587.2| Mus musculus 6 BAC RP23-361L1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 232002 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 cagtggcctctgctattttt 68 |||||||||||||||||||| Sbjct: 133780 cagtggcctctgctattttt 133799
>gb|U64836.1| Caenorhabditis elegans cosmid F10G2, complete sequence Length = 26539 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tttcaaaacaattagcgaaa 85 |||||||||||||||||||| Sbjct: 17427 tttcaaaacaattagcgaaa 17408
>gb|AC003662.3| Homo sapiens chromosome 17, clone CTB-104N19, complete sequence Length = 94576 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gccaaaagagaagcatattt 21 |||||||||||||||||||| Sbjct: 34813 gccaaaagagaagcatattt 34794
>gb|AC135105.11| Mus musculus strain C57BL/6J clone rp23-354f7, complete sequence Length = 209282 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 gggccggggacgactggggc 282 |||||||||||||||||||| Sbjct: 22173 gggccggggacgactggggc 22154
>emb|BX544879.6| Human DNA sequence from clone RP11-769P22 on chromosome 17, complete sequence Length = 177152 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gccaaaagagaagcatattt 21 |||||||||||||||||||| Sbjct: 174097 gccaaaagagaagcatattt 174078
>dbj|AP001524.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-702P11, complete sequence Length = 150847 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 gccaaaagagaagcatattt 21 |||||||||||||||||||| Sbjct: 32504 gccaaaagagaagcatattt 32523
>dbj|AP000916.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-728D14, complete sequence Length = 192926 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 gccaaaagagaagcatattt 21 |||||||||||||||||||| Sbjct: 142989 gccaaaagagaagcatattt 143008
>ref|NM_033567.1| Mus musculus cat eye syndrome chromosome region, candidate 6 homolog (human) (Cecr6), mRNA Length = 4885 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gggccggggacgactggggc 282 |||||||||||||||||||| Sbjct: 942 gggccggggacgactggggc 961 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,291,923 Number of Sequences: 3902068 Number of extensions: 2291923 Number of successful extensions: 45487 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45400 Number of HSP's gapped (non-prelim): 87 length of query: 295 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 273 effective length of database: 17,147,199,772 effective search space: 4681185537756 effective search space used: 4681185537756 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)