ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NU4LM_DIDMA (P41307) NADH-ubiquinone oxidoreductase chain 4L (EC... 30 1.3
2Y1082_PELUB (Q4FLQ2) UPF0078 membrane protein SAR11_1082 28 6.3

>NU4LM_DIDMA (P41307) NADH-ubiquinone oxidoreductase chain 4L (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4L)
          Length = 98

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = -2

Query: 228 GLLFTLRIFSAAFVYQYRLISMANFCLLLPCMLLVFFTFDSIAVLVLLVS 79
           G++ +L IF AA +  + + S++    ++P +LLVF   ++   L LLVS
Sbjct: 35  GMMLSLFIFMAAMITHFHMFSIS----MMPLILLVFSACEAGVGLALLVS 80



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>Y1082_PELUB (Q4FLQ2) UPF0078 membrane protein SAR11_1082|
          Length = 191

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -2

Query: 234 WLGLLFTLRIFSAAFVYQYRLISMANFCLLLPCMLLVFFTFDSIAVLVLLV 82
           +LGL+F +       + +Y  +S     L++P  L+VF  ++SI  +++ V
Sbjct: 117 FLGLVFIISWAVTFLISKYSSLSSLVGSLMVPMYLIVFENYNSIFFIIMFV 167


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,100,896
Number of Sequences: 219361
Number of extensions: 391291
Number of successful extensions: 893
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 80,573,946
effective HSP length: 58
effective length of database: 67,851,008
effective search space used: 1628424192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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