Clone Name | rbastl47h02 |
---|---|
Clone Library Name | barley_pub |
>emb|AL354756.18| Human DNA sequence from clone RP5-966K21 on chromosome Xp11.22-27.2, complete sequence Length = 26921 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 106 actatcaaaagtaaaaaacact 127 |||||||||||||||||||||| Sbjct: 22280 actatcaaaagtaaaaaacact 22301
>emb|AL603839.9| Human DNA sequence from clone RP11-656D10 on chromosome 1 Contains the gene for a novel zinc finger protein, the gene for a novel protein and three novel genes, complete sequence Length = 64478 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 acaaatgctgctgagaaaatg 208 ||||||||||||||||||||| Sbjct: 60291 acaaatgctgctgagaaaatg 60311
>emb|BX663520.9| Zebrafish DNA sequence from clone DKEY-105H12 in linkage group 15, complete sequence Length = 248279 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Minus Query: 230 agccatttccattttccattt 250 ||||||||||||||||||||| Sbjct: 113259 agccatttccattttccattt 113239
>gb|AC169502.1| Mus musculus BAC clone RP24-409G12 from chromosome 9, complete sequence Length = 146217 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 ccaatgctcaaaagaagcttaatg 62 |||||||||||||||| ||||||| Sbjct: 137826 ccaatgctcaaaagaaacttaatg 137803
>gb|AY796304.1| Homo sapiens transforming growth factor, beta receptor III (betaglycan, 300kDa) (TGFBR3) gene, complete cds Length = 226174 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 gcagaagcaagcagaaattt 160 |||||||||||||||||||| Sbjct: 34932 gcagaagcaagcagaaattt 34913
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ctgatatacaaatgctgctg 200 |||||||||||||||||||| Sbjct: 3117072 ctgatatacaaatgctgctg 3117091
>gb|AC004945.1| Homo sapiens PAC clone RP5-997N5 from 7, complete sequence Length = 167372 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 205 aatgcgcaatgtgaaaagtaagcctagc 232 ||||| ||||||||||||||| |||||| Sbjct: 163144 aatgcacaatgtgaaaagtaatcctagc 163171
>emb|BX936460.6| Zebrafish DNA sequence from clone CH211-69N2 in linkage group 9, complete sequence Length = 79327 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 gccatttccattttccattt 250 |||||||||||||||||||| Sbjct: 63132 gccatttccattttccattt 63151
>emb|AL390780.27| Human DNA sequence from clone RP11-488L9 on chromosome 1 Contains part of the TGFBR3 gene fortransforming growth factor, beta receptor III (betaglycan, 300kDa), complete sequence Length = 61095 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 gcagaagcaagcagaaattt 160 |||||||||||||||||||| Sbjct: 56386 gcagaagcaagcagaaattt 56405
>gb|AC023296.6| Homo sapiens chromosome 8, clone RP11-564K14, complete sequence Length = 189532 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 caaggcagaagcaagcagaa 156 |||||||||||||||||||| Sbjct: 20731 caaggcagaagcaagcagaa 20750
>gb|AC104608.7| Drosophila melanogaster X BAC RP98-35A18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174893 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 tatactatcaaaagtaaaaaacac 126 ||||||||||| |||||||||||| Sbjct: 101265 tatactatcaacagtaaaaaacac 101288
>dbj|AK085249.1| Mus musculus 13 days embryo stomach cDNA, RIKEN full-length enriched library, clone:D530050H15 product:hypothetical protein, full insert sequence Length = 1757 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 gtaacatacaaggcagaagc 148 |||||||||||||||||||| Sbjct: 745 gtaacatacaaggcagaagc 764
>gb|AC074041.3|AC074041 Mus musculus strain C57BL6/J chromosome 2 clone RP23-258D16, complete sequence Length = 170548 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 acaaggcagaagcaagcaga 155 |||||||||||||||||||| Sbjct: 16670 acaaggcagaagcaagcaga 16651
>gb|AC019274.5|AC019274 Homo sapiens, clone RP11-11P7, complete sequence Length = 186752 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 caaggcagaagcaagcagaa 156 |||||||||||||||||||| Sbjct: 78963 caaggcagaagcaagcagaa 78944
>emb|BX510912.4| Zebrafish DNA sequence from clone CH211-18J22 in linkage group 3, complete sequence Length = 189210 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 aaaagtaaaaaacactagta 131 |||||||||||||||||||| Sbjct: 99600 aaaagtaaaaaacactagta 99619
>gb|AC074224.3|AC074224 Mus musculus strain C57BL6/J chromosome 2 clone RP23-43C3, complete sequence Length = 188989 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 acaaggcagaagcaagcaga 155 |||||||||||||||||||| Sbjct: 188112 acaaggcagaagcaagcaga 188093
>gb|AC115485.3| Homo sapiens chromosome 8, clone GS1-57L11, complete sequence Length = 169622 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 caaggcagaagcaagcagaa 156 |||||||||||||||||||| Sbjct: 1723 caaggcagaagcaagcagaa 1704
>emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chromosome 2, complete sequence Length = 238545 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tacaaatgctgctgagaaaa 206 |||||||||||||||||||| Sbjct: 112459 tacaaatgctgctgagaaaa 112478
>gb|AE003441.3| Drosophila melanogaster chromosome X, section 25 of 74 of the complete sequence Length = 285949 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 tatactatcaaaagtaaaaaacac 126 ||||||||||| |||||||||||| Sbjct: 23369 tatactatcaacagtaaaaaacac 23346
>gb|AC091260.10| Mus musculus chromosome 9, clone RP23-208K9, complete sequence Length = 188754 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 ccaatgctcaaaagaagcttaatg 62 |||||||||||||||| ||||||| Sbjct: 50619 ccaatgctcaaaagaaacttaatg 50596
>emb|AL928590.10| Mouse DNA sequence from clone RP23-26A12 on chromosome 2, complete sequence Length = 171007 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 acaaggcagaagcaagcaga 155 |||||||||||||||||||| Sbjct: 60558 acaaggcagaagcaagcaga 60577
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 gccatttccattttccattt 250 |||||||||||||||||||| Sbjct: 3300773 gccatttccattttccattt 3300754 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,782,773 Number of Sequences: 3902068 Number of extensions: 2782773 Number of successful extensions: 52974 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52915 Number of HSP's gapped (non-prelim): 59 length of query: 250 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 228 effective length of database: 17,147,199,772 effective search space: 3909561548016 effective search space used: 3909561548016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)