ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL354756.18| Human DNA sequence from clone RP5-966K21 on chr... 44 0.21
2emb|AL603839.9| Human DNA sequence from clone RP11-656D10 on chr... 42 0.82
3emb|BX663520.9| Zebrafish DNA sequence from clone DKEY-105H12 in... 42 0.82
4gb|AC169502.1| Mus musculus BAC clone RP24-409G12 from chromosom... 40 3.2
5gb|AY796304.1| Homo sapiens transforming growth factor, beta rec... 40 3.2
6gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 3.2
7gb|AC004945.1| Homo sapiens PAC clone RP5-997N5 from 7, complete... 40 3.2
8emb|BX936460.6| Zebrafish DNA sequence from clone CH211-69N2 in ... 40 3.2
9emb|AL390780.27| Human DNA sequence from clone RP11-488L9 on chr... 40 3.2
10gb|AC023296.6| Homo sapiens chromosome 8, clone RP11-564K14, com... 40 3.2
11gb|AC104608.7| Drosophila melanogaster X BAC RP98-35A18 (Roswell... 40 3.2
12dbj|AK085249.1| Mus musculus 13 days embryo stomach cDNA, RIKEN ... 40 3.2
13gb|AC074041.3|AC074041 Mus musculus strain C57BL6/J chromosome 2... 40 3.2
14gb|AC019274.5|AC019274 Homo sapiens, clone RP11-11P7, complete s... 40 3.2
15emb|BX510912.4| Zebrafish DNA sequence from clone CH211-18J22 in... 40 3.2
16gb|AC074224.3|AC074224 Mus musculus strain C57BL6/J chromosome 2... 40 3.2
17gb|AC115485.3| Homo sapiens chromosome 8, clone GS1-57L11, compl... 40 3.2
18emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chr... 40 3.2
19gb|AE003441.3| Drosophila melanogaster chromosome X, section 25 ... 40 3.2
20gb|AC091260.10| Mus musculus chromosome 9, clone RP23-208K9, com... 40 3.2
21emb|AL928590.10| Mouse DNA sequence from clone RP23-26A12 on chr... 40 3.2
22emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 3.2

>emb|AL354756.18| Human DNA sequence from clone RP5-966K21 on chromosome Xp11.22-27.2,
             complete sequence
          Length = 26921

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 106   actatcaaaagtaaaaaacact 127
             ||||||||||||||||||||||
Sbjct: 22280 actatcaaaagtaaaaaacact 22301



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>emb|AL603839.9| Human DNA sequence from clone RP11-656D10 on chromosome 1 Contains the
             gene for a novel zinc finger protein, the gene for a novel
             protein and three novel genes, complete sequence
          Length = 64478

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 188   acaaatgctgctgagaaaatg 208
             |||||||||||||||||||||
Sbjct: 60291 acaaatgctgctgagaaaatg 60311



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>emb|BX663520.9| Zebrafish DNA sequence from clone DKEY-105H12 in linkage group 15,
              complete sequence
          Length = 248279

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 230    agccatttccattttccattt 250
              |||||||||||||||||||||
Sbjct: 113259 agccatttccattttccattt 113239



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>gb|AC169502.1| Mus musculus BAC clone RP24-409G12 from chromosome 9, complete sequence
          Length = 146217

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 39     ccaatgctcaaaagaagcttaatg 62
              |||||||||||||||| |||||||
Sbjct: 137826 ccaatgctcaaaagaaacttaatg 137803



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>gb|AY796304.1| Homo sapiens transforming growth factor, beta receptor III (betaglycan,
             300kDa) (TGFBR3) gene, complete cds
          Length = 226174

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   gcagaagcaagcagaaattt 160
             ||||||||||||||||||||
Sbjct: 34932 gcagaagcaagcagaaattt 34913



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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 181     ctgatatacaaatgctgctg 200
               ||||||||||||||||||||
Sbjct: 3117072 ctgatatacaaatgctgctg 3117091



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>gb|AC004945.1| Homo sapiens PAC clone RP5-997N5 from 7, complete sequence
          Length = 167372

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 205    aatgcgcaatgtgaaaagtaagcctagc 232
              ||||| ||||||||||||||| ||||||
Sbjct: 163144 aatgcacaatgtgaaaagtaatcctagc 163171



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>emb|BX936460.6| Zebrafish DNA sequence from clone CH211-69N2 in linkage group 9,
             complete sequence
          Length = 79327

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   gccatttccattttccattt 250
             ||||||||||||||||||||
Sbjct: 63132 gccatttccattttccattt 63151



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>emb|AL390780.27| Human DNA sequence from clone RP11-488L9 on chromosome 1 Contains part
             of the TGFBR3 gene fortransforming growth factor, beta
             receptor III (betaglycan, 300kDa), complete sequence
          Length = 61095

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   gcagaagcaagcagaaattt 160
             ||||||||||||||||||||
Sbjct: 56386 gcagaagcaagcagaaattt 56405



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>gb|AC023296.6| Homo sapiens chromosome 8, clone RP11-564K14, complete sequence
          Length = 189532

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   caaggcagaagcaagcagaa 156
             ||||||||||||||||||||
Sbjct: 20731 caaggcagaagcaagcagaa 20750



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>gb|AC104608.7| Drosophila melanogaster X BAC RP98-35A18 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 174893

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 103    tatactatcaaaagtaaaaaacac 126
              ||||||||||| ||||||||||||
Sbjct: 101265 tatactatcaacagtaaaaaacac 101288



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>dbj|AK085249.1| Mus musculus 13 days embryo stomach cDNA, RIKEN full-length
           enriched library, clone:D530050H15 product:hypothetical
           protein, full insert sequence
          Length = 1757

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 129 gtaacatacaaggcagaagc 148
           ||||||||||||||||||||
Sbjct: 745 gtaacatacaaggcagaagc 764



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>gb|AC074041.3|AC074041 Mus musculus strain C57BL6/J chromosome 2 clone RP23-258D16, complete
             sequence
          Length = 170548

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   acaaggcagaagcaagcaga 155
             ||||||||||||||||||||
Sbjct: 16670 acaaggcagaagcaagcaga 16651



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>gb|AC019274.5|AC019274 Homo sapiens, clone RP11-11P7, complete sequence
          Length = 186752

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   caaggcagaagcaagcagaa 156
             ||||||||||||||||||||
Sbjct: 78963 caaggcagaagcaagcagaa 78944



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>emb|BX510912.4| Zebrafish DNA sequence from clone CH211-18J22 in linkage group 3,
             complete sequence
          Length = 189210

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   aaaagtaaaaaacactagta 131
             ||||||||||||||||||||
Sbjct: 99600 aaaagtaaaaaacactagta 99619



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>gb|AC074224.3|AC074224 Mus musculus strain C57BL6/J chromosome 2 clone RP23-43C3, complete
              sequence
          Length = 188989

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    acaaggcagaagcaagcaga 155
              ||||||||||||||||||||
Sbjct: 188112 acaaggcagaagcaagcaga 188093



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>gb|AC115485.3| Homo sapiens chromosome 8, clone GS1-57L11, complete sequence
          Length = 169622

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 137  caaggcagaagcaagcagaa 156
            ||||||||||||||||||||
Sbjct: 1723 caaggcagaagcaagcagaa 1704



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>emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chromosome 2, complete
              sequence
          Length = 238545

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    tacaaatgctgctgagaaaa 206
              ||||||||||||||||||||
Sbjct: 112459 tacaaatgctgctgagaaaa 112478



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>gb|AE003441.3| Drosophila melanogaster chromosome X, section 25 of 74 of the complete
             sequence
          Length = 285949

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 103   tatactatcaaaagtaaaaaacac 126
             ||||||||||| ||||||||||||
Sbjct: 23369 tatactatcaacagtaaaaaacac 23346



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>gb|AC091260.10| Mus musculus chromosome 9, clone RP23-208K9, complete sequence
          Length = 188754

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 39    ccaatgctcaaaagaagcttaatg 62
             |||||||||||||||| |||||||
Sbjct: 50619 ccaatgctcaaaagaaacttaatg 50596



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>emb|AL928590.10| Mouse DNA sequence from clone RP23-26A12 on chromosome 2, complete
             sequence
          Length = 171007

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   acaaggcagaagcaagcaga 155
             ||||||||||||||||||||
Sbjct: 60558 acaaggcagaagcaagcaga 60577



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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 231     gccatttccattttccattt 250
               ||||||||||||||||||||
Sbjct: 3300773 gccatttccattttccattt 3300754


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,782,773
Number of Sequences: 3902068
Number of extensions: 2782773
Number of successful extensions: 52974
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52915
Number of HSP's gapped (non-prelim): 59
length of query: 250
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 228
effective length of database: 17,147,199,772
effective search space: 3909561548016
effective search space used: 3909561548016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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