>ref|XM_450107.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3007

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 145/180 (80%), Gaps = 17/180 (9%)
 Strand = Plus / Minus

                                                                        
Query: 59   attacacccctgaatctgggaaagct---aaagaggtgacag--ggggagatctaaag-- 111
            |||||||||||||||| |||||||||   |||| || || ||  ||||||||||| ||  
Sbjct: 2884 attacacccctgaatcagggaaagcttttaaagtggggaaagggggggagatctacagtt 2825

                                                                        
Query: 112  -ttctttttcttatgtatggtacacaggaaaacgttacgatctttcaggatgatcatcca 170
             ||||| |||||||||||||||||||  | ||| ||||||||||       |||||||||
Sbjct: 2824 tttcttcttcttatgtatggtacacacaagaacattacgatctt------cgatcatcca 2771

                                                                        
Query: 171  cat-ggggtcggggtccaactcaagaaatggcaattatcaactatagataaatcatcaaa 229
            | | |||||| ||||||||   | |||||||||||||||||||| ||  |||||||||||
Sbjct: 2770 cctgggggtcagggtccaaaagatgaaatggcaattatcaactacag--aaatcatcaaa 2713

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 145/180 (80%), Gaps = 17/180 (9%)
 Strand = Plus / Minus

                                                                           
Query: 59      attacacccctgaatctgggaaagct---aaagaggtgacaggg--ggagatctaaag-- 111
               |||||||||||||||| |||||||||   |||| || || ||||  ||||||||| ||  
Sbjct: 1732686 attacacccctgaatcagggaaagcttttaaagtggggaaagggggggagatctacagtt 1732627

                                                                           
Query: 112     -ttctttttcttatgtatggtacacaggaaaacgttacgatctttcaggatgatcatcca 170
                ||||| |||||||||||||||||||  | ||| ||||||||||       |||||||||
Sbjct: 1732626 tttcttcttcttatgtatggtacacacaagaacattacgatctt------cgatcatcca 1732573

                                                                           
Query: 171     cat-ggggtcggggtccaactcaagaaatggcaattatcaactatagataaatcatcaaa 229
               | | |||||| ||||||||   | |||||||||||||||||||| ||  |||||||||||
Sbjct: 1732572 cctgggggtcagggtccaaaagatgaaatggcaattatcaactacag--aaatcatcaaa 1732515

>dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0415D04
          Length = 176627

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 145/180 (80%), Gaps = 17/180 (9%)
 Strand = Plus / Minus

                                                                          
Query: 59     attacacccctgaatctgggaaagct---aaagaggtgacaggg--ggagatctaaag-- 111
              |||||||||||||||| |||||||||   |||| || || ||||  ||||||||| ||  
Sbjct: 119258 attacacccctgaatcagggaaagcttttaaagtggggaaagggggggagatctacagtt 119199

                                                                          
Query: 112    -ttctttttcttatgtatggtacacaggaaaacgttacgatctttcaggatgatcatcca 170
               ||||| |||||||||||||||||||  | ||| ||||||||||       |||||||||
Sbjct: 119198 tttcttcttcttatgtatggtacacacaagaacattacgatctt------cgatcatcca 119145

                                                                          
Query: 171    cat-ggggtcggggtccaactcaagaaatggcaattatcaactatagataaatcatcaaa 229
              | | |||||| ||||||||   | |||||||||||||||||||| ||  |||||||||||
Sbjct: 119144 cctgggggtcagggtccaaaagatgaaatggcaattatcaactacag--aaatcatcaaa 119087

>dbj|AK103665.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135J15, full
            insert sequence
          Length = 3007

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 145/180 (80%), Gaps = 17/180 (9%)
 Strand = Plus / Minus

                                                                        
Query: 59   attacacccctgaatctgggaaagct---aaagaggtgacag--ggggagatctaaag-- 111
            |||||||||||||||| |||||||||   |||| || || ||  ||||||||||| ||  
Sbjct: 2884 attacacccctgaatcagggaaagcttttaaagtggggaaagggggggagatctacagtt 2825

                                                                        
Query: 112  -ttctttttcttatgtatggtacacaggaaaacgttacgatctttcaggatgatcatcca 170
             ||||| |||||||||||||||||||  | ||| ||||||||||       |||||||||
Sbjct: 2824 tttcttcttcttatgtatggtacacacaagaacattacgatctt------cgatcatcca 2771

                                                                        
Query: 171  cat-ggggtcggggtccaactcaagaaatggcaattatcaactatagataaatcatcaaa 229
            | | |||||| ||||||||   | |||||||||||||||||||| ||  |||||||||||
Sbjct: 2770 cctgggggtcagggtccaaaagatgaaatggcaattatcaactacag--aaatcatcaaa 2713

>emb|AL136097.10| Human DNA sequence from clone RP11-62C3 on chromosome 9q22.1-22.33
              Contains a novel pseudogene, a novel gene, the IARS gene
              for isoleucine-tRNA synthetase, the  gene for a novel
              protein (FLJ20736), the 5' end of a novel gene, a UPF0183
              protein pseudogene, the NOL8 gene for nucleolar protein 8
              and three CpG islands, complete sequence
          Length = 193488

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 10     gtatcatcatttcagtccaaa 30
              |||||||||||||||||||||
Sbjct: 181591 gtatcatcatttcagtccaaa 181571

>emb|AL034376.10|HS529N6 Human DNA sequence from clone RP4-529N6 on chromosome 6p24.1-25.3
             Contains a novel gene, complete sequence
          Length = 131819

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 107   taaagttctttttcttatgta 127
             |||||||||||||||||||||
Sbjct: 95137 taaagttctttttcttatgta 95157

>gb|AC015801.25|AC015801 Homo sapiens chromosome 17, clone RP11-854A13, complete sequence
          Length = 185351

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 83    ctaaagaggtgacagggggagatct 107
             ||||||||||||||||| |||||||
Sbjct: 92548 ctaaagaggtgacagggagagatct 92524

>dbj|AK174886.1| Ciona intestinalis cDNA, clone:citb030d06, full insert sequence
          Length = 576

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 112 ttctttttcttatgtatggta 132
           |||||||||||||||||||||
Sbjct: 397 ttctttttcttatgtatggta 417

>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 204    ttatcaactatagataaatcatca 227
              ||||||||||||||||| ||||||
Sbjct: 194640 ttatcaactatagataattcatca 194663

>gb|AC116895.12| Mus musculus chromosome 8, clone RP24-531C8, complete sequence
          Length = 170041

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    gttctttttcttatgtatgg 130
              ||||||||||||||||||||
Sbjct: 148277 gttctttttcttatgtatgg 148258

>emb|AL135790.7| Human DNA sequence from clone RP11-87N24 on chromosome 9p22.1-23
             Contains a ribosomal protein S12 (RPS12) pseudogene, 2
             novel genes, the 5' end of a variant of the PTPRD gene for
             protein tyrosine phosphatase, receptor type, D (HPTP,
             PTPD, HPTPD). and a CpG island, complete sequence
          Length = 176273

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 7     aaggtatcatcatttcagtccaaa 30
             |||||||||||||| |||||||||
Sbjct: 75388 aaggtatcatcattccagtccaaa 75411

>gb|AC160633.3| Mus musculus chromosome 8, clone RP23-407P24, complete sequence
          Length = 203628

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   gttctttttcttatgtatgg 130
             ||||||||||||||||||||
Sbjct: 18810 gttctttttcttatgtatgg 18829

>gb|AC159652.6| Mus musculus 10 BAC RP24-123H21 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 202827

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 208    caactatagataaatcatca 227
              ||||||||||||||||||||
Sbjct: 126371 caactatagataaatcatca 126390

>gb|AC156567.3| Mus musculus BAC clone RP23-333F2 from chromosome 13, complete sequence
          Length = 204778

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     tcaaaaggtatcatcatttc 22
             ||||||||||||||||||||
Sbjct: 33656 tcaaaaggtatcatcatttc 33675

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 58       aattacacccctgaatctgg 77
                ||||||||||||||||||||
Sbjct: 20897954 aattacacccctgaatctgg 20897973

>emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb0046O08 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 101075

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    aattacacccctgaatctgg 77
             ||||||||||||||||||||
Sbjct: 99681 aattacacccctgaatctgg 99700

>dbj|AK105692.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C06, full
            insert sequence
          Length = 2509

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   aattacacccctgaatctgg 77
            ||||||||||||||||||||
Sbjct: 1719 aattacacccctgaatctgg 1738

>dbj|AK069805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030L10, full
            insert sequence
          Length = 1829

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   aattacacccctgaatctgg 77
            ||||||||||||||||||||
Sbjct: 998  aattacacccctgaatctgg 1017

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 58       aattacacccctgaatctgg 77
                ||||||||||||||||||||
Sbjct: 20824168 aattacacccctgaatctgg 20824187

>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 107819

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    aattacacccctgaatctgg 77
             ||||||||||||||||||||
Sbjct: 61041 aattacacccctgaatctgg 61022

>emb|AL845316.3| Mouse DNA sequence from clone RP23-348I7 on chromosome X, complete
             sequence
          Length = 197688

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   agttctttttcttatgtatg 129
             ||||||||||||||||||||
Sbjct: 53722 agttctttttcttatgtatg 53703

>emb|AL591366.15| Mouse DNA sequence from clone RP23-80N1 on chromosome 11, complete
             sequence
          Length = 117612

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    gtccaaagaggggctctaaaactc 47
             ||||||||||||| ||||||||||
Sbjct: 77732 gtccaaagagggggtctaaaactc 77755


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,589,227
Number of Sequences: 3902068
Number of extensions: 2589227
Number of successful extensions: 43286
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43187
Number of HSP's gapped (non-prelim): 99
length of query: 237
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 215
effective length of database: 17,147,199,772
effective search space: 3686647950980
effective search space used: 3686647950980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)