ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1U202B_ARATH (Q9M2Q4) Hypothetical UPF0202 protein At3g57940 33 0.23

>U202B_ARATH (Q9M2Q4) Hypothetical UPF0202 protein At3g57940|
          Length = 1024

 Score = 33.1 bits (74), Expect = 0.23
 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
 Frame = -1

Query: 96   KALQNEKLSASGVISVKSSKT----SADKKEKHRES 1
            +ALQ+ K+S+SG+ISVKS+K+      DK  K R S
Sbjct: 968  EALQHSKISSSGIISVKSTKSENENGFDKSTKKRSS 1003


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,791,987
Number of Sequences: 219361
Number of extensions: 108781
Number of successful extensions: 462
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 80,573,946
effective HSP length: 9
effective length of database: 78,599,697
effective search space used: 1886392728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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