Clone Name | rbastl47g03 |
---|---|
Clone Library Name | barley_pub |
>gb|BC077834.1| Xenopus laevis MGC80515 protein, mRNA (cDNA clone MGC:80515 IMAGE:5157127), complete cds Length = 2282 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 46 acaaaattcattcatattcaca 67 |||||||||||||||||||||| Sbjct: 1421 acaaaattcattcatattcaca 1400
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 237 caccatactctttaccagctatttca 262 |||||||||||||||||||| ||||| Sbjct: 4775796 caccatactctttaccagctttttca 4775821
>emb|CT030158.4| M.truncatula DNA sequence from clone MTH2-49E10 on chromosome 3, complete sequence Length = 122591 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 aaaattcattcatattcacat 68 ||||||||||||||||||||| Sbjct: 47295 aaaattcattcatattcacat 47275
>gb|AC122253.5| Mus musculus BAC clone RP23-171K3 from chromosome 17, complete sequence Length = 197161 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 cccaaaaatccacggtaaaa 112 |||||||||||||||||||| Sbjct: 11374 cccaaaaatccacggtaaaa 11393
>emb|CR450766.5| Zebrafish DNA sequence from clone DKEY-192C10 in linkage group 8, complete sequence Length = 127307 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 80342 aaaaactgaataaatataag 80361
>emb|CR848718.8| Zebrafish DNA sequence from clone DKEY-5N8 in linkage group 9, complete sequence Length = 253450 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 84584 aaaaactgaataaatataag 84603
>emb|CR626875.10| Zebrafish DNA sequence from clone DKEY-31J4 in linkage group 15, complete sequence Length = 212742 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 23481 aaaaactgaataaatataag 23500
>gb|AC146800.3| Xenopus tropicalis clone CH216-56E14, complete sequence Length = 124911 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 acaaaattcattcatattcacatc 69 |||||||||||||||||| ||||| Sbjct: 17912 acaaaattcattcatattaacatc 17935
>gb|AC117261.4| Mus musculus BAC clone RP24-537K7 from chromosome 17, complete sequence Length = 132575 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 cccaaaaatccacggtaaaa 112 |||||||||||||||||||| Sbjct: 18367 cccaaaaatccacggtaaaa 18348
>emb|BX649266.9| Zebrafish DNA sequence from clone DKEY-19J7 in linkage group 9, complete sequence Length = 235135 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 2647 aaaaactgaataaatataag 2628
>emb|BX005427.19| Zebrafish DNA sequence from clone DKEY-24F17 in linkage group 20 Contains the gene for a novel protein similar to elastase 2, the 3' end of the alas2 gene for aminolevulinate, delta-, synthetase 2, the gene for a novel elastase protein (zgc:637440), two novel genes and two CpG islands, complete sequence Length = 134851 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aaactgaataaatataaggc 22 |||||||||||||||||||| Sbjct: 110929 aaactgaataaatataaggc 110910
>emb|AL772163.7| Zebrafish DNA sequence from clone CH211-156N3 in linkage group 5 Contains a gene for a novel protein with ATPase domain, complete sequence Length = 180048 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 62163 aaaaactgaataaatataag 62182
>emb|BX936331.6| Zebrafish DNA sequence from clone CH211-1C10 in linkage group 3, complete sequence Length = 163806 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 136519 aaaaactgaataaatataag 136500
>emb|CR759877.8| Zebrafish DNA sequence from clone DKEYP-95B5 in linkage group 5, complete sequence Length = 57485 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 40427 aaaaactgaataaatataag 40446
>emb|BX957307.12| Zebrafish DNA sequence from clone CH211-117E20 in linkage group 6, complete sequence Length = 171645 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 60681 aaaaactgaataaatataag 60662
>emb|BX572620.15| Zebrafish DNA sequence from clone CH211-202G13 in linkage group 3, complete sequence Length = 199512 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 128018 aaaaactgaataaatataag 127999
>emb|CR759893.7| Zebrafish DNA sequence from clone DKEY-220K22 in linkage group 5, complete sequence Length = 213981 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 29180 aaaaactgaataaatataag 29199
>gb|AC163614.4| Mus musculus BAC clone RP23-102K8 from chromosome 1, complete sequence Length = 201646 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 tataaggctttccaaaaatt 34 |||||||||||||||||||| Sbjct: 116854 tataaggctttccaaaaatt 116835
>emb|BX649535.7| Zebrafish DNA sequence from clone DKEY-234E12 in linkage group 3, complete sequence Length = 151079 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 58410 aaaaactgaataaatataag 58391
>emb|BX950214.7| Zebrafish DNA sequence from clone CH211-214C2 in linkage group 5, complete sequence Length = 197499 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 72389 aaaaactgaataaatataag 72370
>emb|BX323839.13| Zebrafish DNA sequence from clone CH211-217K17 in linkage group 1, complete sequence Length = 155358 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 42742 aaaaactgaataaatataag 42723
>emb|BX571940.12| Zebrafish DNA sequence from clone DKEY-171N3 in linkage group 14, complete sequence Length = 179550 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 141861 aaaaactgaataaatataag 141880
>ref|NM_164786.1| Drosophila melanogaster Basigin CG31605-PE, isoform E (Bsg) mRNA, complete cds Length = 2790 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 acaaaattcattcatattca 65 |||||||||||||||||||| Sbjct: 1634 acaaaattcattcatattca 1615
>ref|NM_164789.1| Drosophila melanogaster Basigin CG31605-PI, isoform I (Bsg) mRNA, complete cds Length = 2827 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 acaaaattcattcatattca 65 |||||||||||||||||||| Sbjct: 1671 acaaaattcattcatattca 1652
>ref|NM_164788.1| Drosophila melanogaster Basigin CG31605-PH, isoform H (Bsg) mRNA, complete cds Length = 2999 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 acaaaattcattcatattca 65 |||||||||||||||||||| Sbjct: 1843 acaaaattcattcatattca 1824
>ref|NM_164787.1| Drosophila melanogaster Basigin CG31605-PF, isoform F (Bsg) mRNA, complete cds Length = 3095 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 acaaaattcattcatattca 65 |||||||||||||||||||| Sbjct: 1939 acaaaattcattcatattca 1920
>ref|NM_164783.1| Drosophila melanogaster Basigin CG31605-PB, isoform B (Bsg) mRNA, complete cds Length = 2742 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 acaaaattcattcatattca 65 |||||||||||||||||||| Sbjct: 1586 acaaaattcattcatattca 1567
>ref|NM_164785.1| Drosophila melanogaster Basigin CG31605-PD, isoform D (Bsg) mRNA, complete cds Length = 2951 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 acaaaattcattcatattca 65 |||||||||||||||||||| Sbjct: 1795 acaaaattcattcatattca 1776
>ref|NM_164782.1| Drosophila melanogaster Basigin CG31605-PA, isoform A (Bsg) mRNA, complete cds Length = 2857 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 acaaaattcattcatattca 65 |||||||||||||||||||| Sbjct: 1701 acaaaattcattcatattca 1682
>ref|NM_164784.1| Drosophila melanogaster Basigin CG31605-PC, isoform C (Bsg) mRNA, complete cds Length = 3066 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 acaaaattcattcatattca 65 |||||||||||||||||||| Sbjct: 1910 acaaaattcattcatattca 1891
>gb|BT006333.1| Drosophila melanogaster LD05560 full insert cDNA Length = 2397 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 acaaaattcattcatattca 65 |||||||||||||||||||| Sbjct: 1752 acaaaattcattcatattca 1733
>emb|BX248230.21| Zebrafish DNA sequence from clone CH211-213O11 in linkage group 11, complete sequence Length = 217432 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 49643 aaaaactgaataaatataag 49624
>gb|AC007416.12|AC007416 Drosophila melanogaster, chromosome 2L, region 28B-28B, BAC clone BACR08I01, complete sequence Length = 169427 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 acaaaattcattcatattca 65 |||||||||||||||||||| Sbjct: 160942 acaaaattcattcatattca 160923
>gb|AC007696.5|AC007696 Drosophila melanogaster, chromosome 2L, region 28B, BAC clone BACR14I17, complete sequence Length = 157948 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 acaaaattcattcatattca 65 |||||||||||||||||||| Sbjct: 19985 acaaaattcattcatattca 19966
>gb|BT005198.1| Drosophila melanogaster LD19437 full insert cDNA Length = 2724 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 acaaaattcattcatattca 65 |||||||||||||||||||| Sbjct: 1550 acaaaattcattcatattca 1531
>emb|AJ340177.1|HSA340177 Homo sapiens genomic sequence surrounding NotI site, clone NR5-GN22C Length = 715 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atataaggctttccaaaaat 33 |||||||||||||||||||| Sbjct: 541 atataaggctttccaaaaat 522
>emb|CR759867.5| Zebrafish DNA sequence from clone CH211-233F16 in linkage group 19, complete sequence Length = 177867 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 98459 aaaaactgaataaatataag 98478
>emb|BX255905.4| Zebrafish DNA sequence from clone DKEY-11B8 in linkage group 20, complete sequence Length = 118677 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 85016 aaaaactgaataaatataag 84997
>emb|AL954305.14| Zebrafish DNA sequence from clone BUSM1-189A20 in linkage group 20, complete sequence Length = 110369 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 92270 aaaaactgaataaatataag 92251
>emb|AL954744.8| Zebrafish DNA sequence from clone DKEY-119M7 in linkage group 20, complete sequence Length = 166911 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 57257 aaaaactgaataaatataag 57238
>emb|AL928820.8| Zebrafish DNA sequence from clone CH211-105D11 in linkage group 19, complete sequence Length = 155348 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 14881 aaaaactgaataaatataag 14862
>emb|CR383669.17| Zebrafish DNA sequence from clone DKEY-25O1 in linkage group 24, complete sequence Length = 185252 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 8967 aaaaactgaataaatataag 8948
>emb|CR354425.7| Zebrafish DNA sequence from clone CH211-93N11 in linkage group 25, complete sequence Length = 161571 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 155906 aaaaactgaataaatataag 155887
>emb|CR555298.10| Zebrafish DNA sequence from clone CH211-25D12 in linkage group 11, complete sequence Length = 183135 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 93759 aaaaactgaataaatataag 93740
>gb|AE003619.3| Drosophila melanogaster chromosome 2L, section 28 of 83 of the complete sequence Length = 289516 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 acaaaattcattcatattca 65 |||||||||||||||||||| Sbjct: 287173 acaaaattcattcatattca 287154
>emb|AL928675.7| Zebrafish DNA sequence from clone DKEY-13B16 in linkage group 5, complete sequence Length = 191304 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 12831 aaaaactgaataaatataag 12812
>emb|BX005283.6| Zebrafish DNA sequence from clone CH211-93G21, complete sequence Length = 156246 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 16405 aaaaactgaataaatataag 16424
>emb|BX004856.5| Zebrafish DNA sequence from clone CH211-166O17 in linkage group 5, complete sequence Length = 124886 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 89819 aaaaactgaataaatataag 89800
>emb|CR848665.9| Zebrafish DNA sequence from clone CH211-276C2 in linkage group 15, complete sequence Length = 158232 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 108657 aaaaactgaataaatataag 108676
>emb|AL929132.9| Mouse DNA sequence from clone RP23-346G8 on chromosome 2, complete sequence Length = 129438 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 92987 aaaaactgaataaatataag 92968
>emb|CR354395.20| Zebrafish DNA sequence from clone DKEYP-45G11 in linkage group 12, complete sequence Length = 160211 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaaactgaataaatataag 20 |||||||||||||||||||| Sbjct: 130689 aaaaactgaataaatataag 130708
>gb|U47321.1|TTU47321 Tetrahymena thermophila histone acetyltransferase A catalytic subunit HAT A1 mRNA, complete cds Length = 1258 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 231 ttaatgcaccatactctttaccag 254 |||||||| ||||||||||||||| Sbjct: 733 ttaatgcagcatactctttaccag 710 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,631,795 Number of Sequences: 3902068 Number of extensions: 2631795 Number of successful extensions: 55020 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54907 Number of HSP's gapped (non-prelim): 113 length of query: 286 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 264 effective length of database: 17,147,199,772 effective search space: 4526860739808 effective search space used: 4526860739808 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)