ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC011901.4| Homo sapiens BAC clone RP11-547P13 from 2, comple... 42 0.68
2gb|AC093133.3| Papio anubis clone RP41-57F8, complete sequence 42 0.68
3emb|AL355137.23| Human DNA sequence from clone RP11-511D14 on ch... 40 2.7
4gb|AC023449.11| Homo sapiens chromosome 15, clone RP11-345J18, c... 40 2.7
5gb|AC109512.12| Homo sapiens chromosome 15, clone RP11-931B1, co... 40 2.7

>gb|AC011901.4| Homo sapiens BAC clone RP11-547P13 from 2, complete sequence
          Length = 201567

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 39     aacgagtgagaacatcttatgtaca 63
              ||||||||||||||||| |||||||
Sbjct: 178930 aacgagtgagaacatctcatgtaca 178954



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>gb|AC093133.3| Papio anubis clone RP41-57F8, complete sequence
          Length = 177993

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 185    acagcacccaggccacttcca 205
              |||||||||||||||||||||
Sbjct: 119370 acagcacccaggccacttcca 119390



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>emb|AL355137.23| Human DNA sequence from clone RP11-511D14 on chromosome 6p23-24.3
            Contains the gene for a novel protein isentical to
            ribosomal protein L15 (RPL15), complete sequence
          Length = 190223

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  gtgaccaaacccactttaca 146
            ||||||||||||||||||||
Sbjct: 8470 gtgaccaaacccactttaca 8451



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>gb|AC023449.11| Homo sapiens chromosome 15, clone RP11-345J18, complete sequence
          Length = 175336

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   ggagtacagcacccaggcca 199
             ||||||||||||||||||||
Sbjct: 99411 ggagtacagcacccaggcca 99430



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>gb|AC109512.12| Homo sapiens chromosome 15, clone RP11-931B1, complete sequence
          Length = 189975

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    ggagtacagcacccaggcca 199
              ||||||||||||||||||||
Sbjct: 175788 ggagtacagcacccaggcca 175807


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,255,771
Number of Sequences: 3902068
Number of extensions: 1255771
Number of successful extensions: 80919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80911
Number of HSP's gapped (non-prelim): 8
length of query: 213
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 191
effective length of database: 17,147,199,772
effective search space: 3275115156452
effective search space used: 3275115156452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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