>gb|AY106878.1| Zea mays PCO069584 mRNA sequence
          Length = 718

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                
Query: 289 gggttctgtccaggctgctgtggaccaggcggcggnggcggcattccatgcct 341
           ||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||
Sbjct: 493 gggttctgtccaggctgctgtggaccaggtggcggaggcggcatcccaggcct 441

>gb|BT018853.1| Zea mays clone EL01N0555H12.d mRNA sequence
          Length = 1287

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                       
Query: 289 gggttctgtccaggctgctgtggaccaggcggcggnggcggcat 332
           ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 907 gggttctgtccaggctgctgtggaccaggtggcggaggcggcat 864

>gb|AC163631.5| Mus musculus BAC clone RP23-147B15 from chromosome 13, complete
            sequence
          Length = 211368

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 29   taacagagcgaaataacatctcaat 53
            |||||||| ||||||||||||||||
Sbjct: 1315 taacagagagaaataacatctcaat 1291

>gb|AC132604.4| Mus musculus BAC clone RP24-80P7 from chromosome 13, complete sequence
          Length = 164377

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 29     taacagagcgaaataacatctcaat 53
              |||||||| ||||||||||||||||
Sbjct: 100350 taacagagagaaataacatctcaat 100326

>ref|XM_947315.1| Theileria annulata strain Ankara topoisomerase-related
            nucleotidyltransferase (TA12470) partial mRNA
          Length = 1599

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 274  tttttctactactgggggttc 294
            |||||||||||||||||||||
Sbjct: 982  tttttctactactgggggttc 1002

>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12
          Length = 349346

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 185    tcctcccatcaaaagcaagag 205
              |||||||||||||||||||||
Sbjct: 175916 tcctcccatcaaaagcaagag 175936

>gb|AC016580.7|AC016580 Homo sapiens chromosome 5 clone CTD-2509J24, complete sequence
          Length = 184118

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 209    tacactgacaaggcttttatctctt 233
              ||||| |||||||||||||||||||
Sbjct: 159156 tacacagacaaggcttttatctctt 159180

>gb|AC008935.8|AC008935 Homo sapiens chromosome 5 clone CTD-2308L13, complete sequence
          Length = 102477

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 209   tacactgacaaggcttttatctctt 233
             ||||| |||||||||||||||||||
Sbjct: 32313 tacacagacaaggcttttatctctt 32289

>gb|AC008526.5|AC008526 Homo sapiens chromosome 5 clone CTC-470C15, complete sequence
          Length = 168243

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 269   ataggtttttctactactggg 289
             |||||||||||||||||||||
Sbjct: 39732 ataggtttttctactactggg 39712

>gb|AC008873.4|AC008873 Homo sapiens chromosome 5 clone CTD-2199H11, complete sequence
          Length = 170358

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 209   tacactgacaaggcttttatctctt 233
             ||||| |||||||||||||||||||
Sbjct: 12135 tacacagacaaggcttttatctctt 12159

>gb|AF135154.1|AF135154 Bordetella pertussis ferric alcaligin siderophore receptor (fauA)
            gene, complete cds; and putative multiple antibiotic
            resistance protein (mar) gene, partial cds
          Length = 2898

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 185  tcctcccatcaaaagcaagag 205
            |||||||||||||||||||||
Sbjct: 1674 tcctcccatcaaaagcaagag 1694

>gb|AY105845.1| Zea mays PCO069586 mRNA sequence
          Length = 767

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 289 gggttctgtccaggctgctgtggaccaggcggcggnggcggcat 332
           ||||| |||||||||||||| || ||||| ||||| || |||||
Sbjct: 343 gggttttgtccaggctgctgcgggccaggtggcggaggtggcat 300

>gb|AC102525.8| Mus musculus chromosome 8, clone RP24-133K20, complete sequence
          Length = 162463

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   caaccaacagttaaacaagc 142
             ||||||||||||||||||||
Sbjct: 42823 caaccaacagttaaacaagc 42804

>ref|XM_960548.1| Neurospora crassa OR74A hypothetical protein (NCU02510.1) partial
            mRNA
          Length = 5037

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  tctgtccaggctgctgtgga 312
            ||||||||||||||||||||
Sbjct: 1240 tctgtccaggctgctgtgga 1221

>gb|AE006108.1| Pasteurella multocida subsp. multocida str. Pm70 section 75 of 204 of
            the complete genome
          Length = 10903

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 128  aacagttaaacaagctttag 147
            ||||||||||||||||||||
Sbjct: 6559 aacagttaaacaagctttag 6540

>ref|XM_331708.1| Neurospora crassa OR74A hypothetical protein (NCU02510.1) partial
            mRNA
          Length = 5037

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  tctgtccaggctgctgtgga 312
            ||||||||||||||||||||
Sbjct: 1240 tctgtccaggctgctgtgga 1221

>ref|XM_654759.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2247.2), mRNA
          Length = 2163

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 acaaccaacagttaaacaag 141
           ||||||||||||||||||||
Sbjct: 182 acaaccaacagttaaacaag 201

>emb|AL158196.24| Human DNA sequence from clone RP11-90M2 on chromosome 13 Contains gene
             FLJ10956, the gene for HSPC126 protein (DRIP36), a novel
             gene similar to polymerase (RNA) II (DNA directed)
             polypeptide K, 7.0kDa (POLR2K), a novel gene and two CpG
             islands, complete sequence
          Length = 152594

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   aggcttttatctcttctcaa 238
             ||||||||||||||||||||
Sbjct: 96128 aggcttttatctcttctcaa 96147

>emb|AL138752.5| Human DNA sequence from clone RP11-3J10 on chromosome 9p12-13.3 Contains
              the 3' end of the SHB gene for SHB (Src homology 2 domain
              containing) adaptor protein B, the MCART1 gene for
              mitochondrial carrier triple repeat 1 (MGC14836), a novel
              gene, a novel pseudogene, a phosphoribosylaminoimidazole
              carboxylase, phosphoribosylaminoimidazole
              succinocarboxamide synthetase (PAICS) pseudogene, a novel
              gene (MGC10765,FLJ23201), a mitochondrial ribosomal protein
              S10 (MRP-S10, FLJ10567, PNAS-122) (MRPS10) psueodgene, the
              gene for exosome component RRP40, a novel gene (FLJ31455)
              and four CpG islands, complete sequence
          Length = 189271

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    tactgggggttctgtccagg 302
              ||||||||||||||||||||
Sbjct: 152824 tactgggggttctgtccagg 152805

>dbj|AK126527.1| Homo sapiens cDNA FLJ44563 fis, clone UTERU3008917
          Length = 3622

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 283 tactgggggttctgtccagg 302
           ||||||||||||||||||||
Sbjct: 296 tactgggggttctgtccagg 277

>gb|AC112214.2| Homo sapiens chromosome 3 clone RP11-649F12, complete sequence
          Length = 173990

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   cagataggtttttctactac 285
             ||||||||||||||||||||
Sbjct: 93588 cagataggtttttctactac 93607

>gb|AC104167.2| Homo sapiens chromosome 3 clone RP11-253K11, complete sequence
          Length = 173288

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   cagataggtttttctactac 285
             ||||||||||||||||||||
Sbjct: 45674 cagataggtttttctactac 45693

>emb|CR390077.1| Gallus gallus finished cDNA, clone ChEST997j11
          Length = 608

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 175 acagtccgtctcctcccatc 194
           ||||||||||||||||||||
Sbjct: 289 acagtccgtctcctcccatc 270

>gb|AC104564.11| Homo sapiens chromosome 17, clone RP11-68I3, complete sequence
          Length = 173058

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 29    taacagagcgaaataacatctcaa 52
             ||||||||||||| ||||||||||
Sbjct: 73807 taacagagcgaaacaacatctcaa 73830

>emb|AJ277636.1|PMU277636 Pasteurella multocida mapB gene
          Length = 8139

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  aacagttaaacaagctttag 147
            ||||||||||||||||||||
Sbjct: 4110 aacagttaaacaagctttag 4129

>gb|AC006226.4|AC006226 Homo sapiens chromosome 4 clone C0011C13 map 4p16, complete sequence
          Length = 162349

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aaagcaatttatgatctgaa 26
             ||||||||||||||||||||
Sbjct: 81082 aaagcaatttatgatctgaa 81063


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,256,834
Number of Sequences: 3902068
Number of extensions: 3256834
Number of successful extensions: 56579
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56546
Number of HSP's gapped (non-prelim): 33
length of query: 350
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 328
effective length of database: 17,147,199,772
effective search space: 5624281525216
effective search space used: 5624281525216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)