ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC131977.8| Mus musculus chromosome 10, clone RP24-151B6, com... 48 0.013
2gb|AC102593.8| Mus musculus chromosome 10, clone RP23-341M12, co... 48 0.013
3gb|AC096670.1| Homo sapiens BAC clone RP11-438K19 from 2, comple... 40 3.2
4emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 3.2
5dbj|AP006289.2| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.2
6dbj|AP003780.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.2
7gb|U73634.1|HSU73634 Human chromosome 11 148c3 cosmid, complete ... 40 3.2

>gb|AC131977.8| Mus musculus chromosome 10, clone RP24-151B6, complete sequence
          Length = 146010

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 49     aagaattacagaccctacaattcc 72
              ||||||||||||||||||||||||
Sbjct: 105551 aagaattacagaccctacaattcc 105574



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>gb|AC102593.8| Mus musculus chromosome 10, clone RP23-341M12, complete sequence
          Length = 212025

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 49     aagaattacagaccctacaattcc 72
              ||||||||||||||||||||||||
Sbjct: 146028 aagaattacagaccctacaattcc 146005



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>gb|AC096670.1| Homo sapiens BAC clone RP11-438K19 from 2, complete sequence
          Length = 181497

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    aaaagaattacagaccctac 66
             ||||||||||||||||||||
Sbjct: 68238 aaaagaattacagaccctac 68257



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 5       ccacgaacagcccggcatag 24
               ||||||||||||||||||||
Sbjct: 5190897 ccacgaacagcccggcatag 5190878



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>dbj|AP006289.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-466C23, complete
              sequence
          Length = 166042

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    gtttccccacagctgtcatg 162
              ||||||||||||||||||||
Sbjct: 118461 gtttccccacagctgtcatg 118480



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>dbj|AP003780.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-472L10, complete
            sequence
          Length = 122351

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 143  gtttccccacagctgtcatg 162
            ||||||||||||||||||||
Sbjct: 1255 gtttccccacagctgtcatg 1274



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>gb|U73634.1|HSU73634 Human chromosome 11 148c3 cosmid, complete sequence
          Length = 34013

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   gtttccccacagctgtcatg 162
             ||||||||||||||||||||
Sbjct: 14442 gtttccccacagctgtcatg 14423


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,654,501
Number of Sequences: 3902068
Number of extensions: 1654501
Number of successful extensions: 24177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24165
Number of HSP's gapped (non-prelim): 12
length of query: 249
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 227
effective length of database: 17,147,199,772
effective search space: 3892414348244
effective search space used: 3892414348244
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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