ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPZ_SCHPO (P78968) Serine/threonine-protein phosphatase PP-Z (EC... 31 0.84
2TSC10_YEAST (P38342) 3-ketodihydrosphingosine reductase TSC10 (E... 29 3.2
3BSH_CHICK (Q6RFL5) Brain-specific homeobox protein homolog 29 3.2
4TXH3_ORNHU (P61103) Huwentoxin-3 precursor (Huwentoxin-III) (HwT... 28 7.1
5MRAY_ENTHR (O07668) Phospho-N-acetylmuramoyl-pentapeptide-transf... 28 7.1
6SCAR2_ARATH (Q5XPJ9) Protein SCAR2 (AtSCAR2) (Protein WAVE4) (Pr... 28 7.1
7AREA_ASPNG (O13412) Nitrogen regulatory protein areA 28 7.1
8HEM1_HALSA (Q9HP72) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR) 27 9.2
9ANK1_MOUSE (Q02357) Ankyrin-1 (Erythrocyte ankyrin) 27 9.2
10NU4M_APILI (P34853) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 27 9.2
11ANK1_HUMAN (P16157) Ankyrin-1 (Erythrocyte ankyrin) (Ankyrin-R) 27 9.2

>PPZ_SCHPO (P78968) Serine/threonine-protein phosphatase PP-Z (EC 3.1.3.16)|
          Length = 515

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 143 TPTKPNPSLSTKLTAPEIACE-HNHHHNTVLLYKIAI*ISNLSPQSRCP 286
           +PT P+PS    + +P  A   H+HHH++   Y ++   S  SP S  P
Sbjct: 98  SPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSYAVSP-TSPTSPTSSGP 145



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>TSC10_YEAST (P38342) 3-ketodihydrosphingosine reductase TSC10 (EC 1.1.1.102)|
           (3-dehydrosphinganine reductase) (KDS reductase)
           (Temperature-sensitive CSG2 suppressor protein 10)
          Length = 320

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 236 TAKLCCGGGCVHKLFQALS 180
           T  LCC GG V KLF+ LS
Sbjct: 111 TQTLCCAGGAVPKLFRGLS 129



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>BSH_CHICK (Q6RFL5) Brain-specific homeobox protein homolog|
          Length = 233

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 107 SVQVRIPYVMYTTPTKPNPSLSTKLTAPEIACEHNHHHNTVLLYKIAI*ISNLSP 271
           S+  R+P + Y  P  P P+L      P +    +HHH+   L    + +  L P
Sbjct: 44  SLASRVPLLDYGYPLMPAPALLAPHPHPALHKPEHHHHHPYFLTTSGVPVPALFP 98



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>TXH3_ORNHU (P61103) Huwentoxin-3 precursor (Huwentoxin-III) (HwTx-III)|
           [Contains: Mutant of huwentoxin-3 (Mutant of
           huwentoxin-III) (mHWTX-III) (HWTX-IIIa)]
          Length = 87

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 347 QSPKEKKRKEMQACLLAVRARDSGSEVTDC*FIWQFCTAKLCCGG 213
           +S +++  KEM + + AV   D   E  DC    + C  KLCC G
Sbjct: 26  ESEEKEFPKEMLSSIFAVD-NDFKQEERDCAGYMRECKEKLCCSG 69



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>MRAY_ENTHR (O07668) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC|
           2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 321

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
 Frame = -1

Query: 249 MAILYSKTVLWWWLCSQAISGAVSLVDK-DGF--GLVGVVYITYGILTW----TDILFAC 91
           + + Y    ++W +     S AV+L D  DG   GL  + + TYGI+ W     D+L  C
Sbjct: 150 LGLFYGVFAIFWLV---GFSNAVNLTDGIDGLVAGLGTISFATYGIIAWHQQQYDVLVIC 206



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>SCAR2_ARATH (Q5XPJ9) Protein SCAR2 (AtSCAR2) (Protein WAVE4) (Protein|
           DISTORTED3) (Protein IRREGULAR TRICHOME BRANCH1)
          Length = 1399

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 95  LVKLGDFPNCVYDSSEEC 42
           +V  GD P CV DS EEC
Sbjct: 120 VVTSGDLPRCVMDSYEEC 137



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>AREA_ASPNG (O13412) Nitrogen regulatory protein areA|
          Length = 882

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 113 QVRIPYVMYTTPTKPNPSLSTKLTAPEIACE 205
           Q+  P ++ + PT+ NPSLST LT+  +  E
Sbjct: 166 QLTSPPLIASRPTRQNPSLSTDLTSDPMNLE 196



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>HEM1_HALSA (Q9HP72) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)|
          Length = 436

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 178 TDSA*NSL*TQPPPQHSFAVQNCH-INQQSVTSEPLS 285
           T++A ++L  QPP + +F +Q CH +    VT++  S
Sbjct: 31  TEAALDALLEQPPVEEAFVLQTCHRVEAYVVTADQAS 67



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>ANK1_MOUSE (Q02357) Ankyrin-1 (Erythrocyte ankyrin)|
          Length = 1862

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/58 (29%), Positives = 22/58 (37%)
 Frame = +2

Query: 119 RIPYVMYTTPTKPNPSLSTKLTAPEIACEHNHHHNTVLLYKIAI*ISNLSPQSRCPWH 292
           R+  V+     KPN       T   IAC+ NH     LL K    I  ++     P H
Sbjct: 348 RVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTPLH 405



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>NU4M_APILI (P34853) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 447

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 234 SKTVLWWWLCSQAISGAVSLVDKDGFGLVGVVYITYGILTW 112
           S ++LW+ LCS  +   VSL       L+  V +  G+++W
Sbjct: 348 SMSLLWFMLCSSNMGSPVSL------NLISEVMLLIGMISW 382



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>ANK1_HUMAN (P16157) Ankyrin-1 (Erythrocyte ankyrin) (Ankyrin-R)|
          Length = 1880

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/58 (29%), Positives = 22/58 (37%)
 Frame = +2

Query: 119 RIPYVMYTTPTKPNPSLSTKLTAPEIACEHNHHHNTVLLYKIAI*ISNLSPQSRCPWH 292
           R+  V+     KPN       T   IAC+ NH     LL K    I  ++     P H
Sbjct: 351 RVAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLH 408


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,629,306
Number of Sequences: 219361
Number of extensions: 952653
Number of successful extensions: 2380
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2375
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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