ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl47e12 |
|---|---|
| Clone Library Name | barley_pub |
>GL32_ARATH (Q9SR72) Germin-like protein subfamily 3 member 2 precursor| Length = 227 Score = 29.3 bits (64), Expect = 2.6 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 4/72 (5%) Frame = +2 Query: 17 SICLL-INSCFTGSQDPDRVSS---TSTYNMPHETRPTSNEQPSLILSIVISNSCTFCTI 184 ++CLL N CFT + DPD + P+ S P S V + F + Sbjct: 11 ALCLLCFNVCFTLASDPDPIQDFCIPKPVTSPYHDHHFSTNLPCKNSSEVTTEDFVFSGL 70 Query: 185 LTVASYLQIGFS 220 T ++ + GF+ Sbjct: 71 KTAGNFTETGFA 82
>ZN566_PANTR (Q6J6I6) Zinc finger protein 566| Length = 418 Score = 29.3 bits (64), Expect = 2.6 Identities = 22/73 (30%), Positives = 29/73 (39%) Frame = +2 Query: 101 HETRPTSNEQPSLILSIVISNSCTFCTILTVASYLQIGFSHNSQSHRKIESCISTTSIPQ 280 HE PT + PS L +I++ FC + + F H SQ I TT P Sbjct: 146 HEDLPTLSHHPSFTLQQIINSKKKFC----ASKEYRKTFRHGSQF--ATHEIIHTTEKPY 199 Query: 281 YTKDGGSIITTPS 319 K+ G PS Sbjct: 200 ECKECGKSFRHPS 212
>TAXB1_RAT (Q66HA4) Tax1-binding protein 1 homolog (Liver regeneration-related| protein LRRG004) Length = 813 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/50 (28%), Positives = 22/50 (44%) Frame = +2 Query: 146 SIVISNSCTFCTILTVASYLQIGFSHNSQSHRKIESCISTTSIPQYTKDG 295 S + C C ++ +Y QI F + +SH K+ S P Y + G Sbjct: 747 SFDVHKKCPLCELMFPPNYDQIKFEEHVESHWKVCPMCSEQFPPDYDQQG 796
>SPEG_BRARE (Q696W0) Striated muscle preferentially expressed protein kinase (EC| 2.7.11.1) Length = 2995 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 7/83 (8%) Frame = +2 Query: 20 ICLLINSCFTGSQDPDRVSSTSTYNMPHET---RPTSNEQPSLILSIVISN----SCTFC 178 +CL S F G D D + + YN+ E + E I+ +++SN T C Sbjct: 1440 LCLTGVSPFAGENDRDTLLNIRNYNVAFEESMFKDLCREAKGFIIKVLVSNKLRPDATEC 1499 Query: 179 TILTVASYLQIGFSHNSQSHRKI 247 + L G S N+ H+++ Sbjct: 1500 LLHPWFKSLTKGKSINTTLHKQV 1522
>YK82_YEAST (P36170) Hypothetical protein YKR102W precursor| Length = 1169 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 7/49 (14%) Frame = +2 Query: 47 TGSQDPDRVSS------TSTYNMPHETRPTSNEQPSLI-LSIVISNSCT 172 TG D SS T+ Y M ET P++NEQ +LI +S SNSC+ Sbjct: 904 TGKVTSDETSSGFSRDRTTVYRMTSET-PSTNEQTTLITVSSCESNSCS 951
>PIP2_YEAST (P52960) Peroxisome proliferation transcriptional regulator| (Oleate-activated transcription factor 2) Length = 996 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%) Frame = +2 Query: 17 SICLLINSC--------FTGSQDPDRVSSTSTYNMPHETRPTSNEQ 130 +I LL+NS ++ S DP V + STY++ H +NE+ Sbjct: 869 TIELLLNSSVENESVPPYSSSNDPTNVGNASTYSLAHNISNQNNEE 914
>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch| 4) [Contains: Transforming protein Int-3; Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 1964 Score = 27.7 bits (60), Expect = 7.5 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 6/99 (6%) Frame = +2 Query: 38 SCFTGSQDPDRVSSTSTYNMPHETRPTSN------EQPSLILSIVISNSCTFCTILTVAS 199 +C GS DRV S S P T + QP + + +N T T+ Sbjct: 360 TCAPGSTCIDRVGSFSCLCPPGRTGLLCHLEDMCLSQPCHVNAQCSTNPLTGSTLCIC-- 417 Query: 200 YLQIGFSHNSQSHRKIESCISTTSIPQYTKDGGSIITTP 316 Q G+S S H+ ++ C P + GGS I TP Sbjct: 418 --QPGYS-GSTCHQDLDECQMAQQGPSPCEHGGSCINTP 453
>SYT14_HUMAN (Q8NB59) Synaptotagmin-14 (Synaptotagmin XIV) (SytXIV)| Length = 555 Score = 27.3 bits (59), Expect = 9.9 Identities = 10/33 (30%), Positives = 19/33 (57%) Frame = +2 Query: 203 LQIGFSHNSQSHRKIESCISTTSIPQYTKDGGS 301 L + F ++SQ + + + + T IP Y + GG+ Sbjct: 264 LDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGN 296
>VL2_HPV54 (Q81023) Minor capsid protein L2| Length = 470 Score = 27.3 bits (59), Expect = 9.9 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = +2 Query: 212 GFSHNSQSHRKIESCISTTSIP 277 GFS ++ SH +++ + TTSIP Sbjct: 371 GFSSSTVSHSSVQTALQTTSIP 392
>LIPA2_GLOVI (Q7NLU2) Lipoyl synthase 2 (EC 2.8.1.-) (Lipoic acid synthase 2)| (Lipoate synthase 2) (Lipoyl-acyl-carrier protein synthase 2) (Sulfur insertion protein lipA2) (Lip-syn 2) Length = 298 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/57 (22%), Positives = 27/57 (47%) Frame = +2 Query: 125 EQPSLILSIVISNSCTFCTILTVASYLQIGFSHNSQSHRKIESCISTTSIPQYTKDG 295 E + +L+++ +C ILT+ YLQ + H K+E+ + ++ + G Sbjct: 206 ESEAEVLAVMADLRAVYCDILTIGQYLQ-----PTPKHLKVEAFVEPALFERWRRAG 257
>TAXB1_MOUSE (Q3UKC1) Tax1-binding protein 1 homolog| Length = 814 Score = 27.3 bits (59), Expect = 9.9 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 6/88 (6%) Frame = +2 Query: 50 GSQDPDRVSSTSTYNMPHETRPTSNEQPS------LILSIVISNSCTFCTILTVASYLQI 211 G +DP+ S N+P P + S S + C C ++ +Y Q Sbjct: 712 GLEDPE--DSREDENVPIPPDPANQHLRSHGAGFCFDSSFDVHKKCPLCELMFPPNYDQT 769 Query: 212 GFSHNSQSHRKIESCISTTSIPQYTKDG 295 F + +SH K+ S P Y + G Sbjct: 770 KFEEHVESHWKVCPMCSEQFPPDYDQQG 797 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,706,846 Number of Sequences: 219361 Number of extensions: 792791 Number of successful extensions: 1778 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1653 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1777 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
