ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl47e10 |
|---|---|
| Clone Library Name | barley_pub |
>COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 35.8 bits (81), Expect = 0.030 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = -3 Query: 250 GQKDVSCPYCASRFVPSVEGQLCSICELSVVGADASGLLCSPTQSR 113 G+ CP + + P +GQ+C + ++ +G D GL SP Q R Sbjct: 1179 GKPVEKCPLSGACYSPEFKGQICKVTTVTEIGKDVIGLRISPLQFR 1224
>COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 35.4 bits (80), Expect = 0.039 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = -3 Query: 250 GQKDVSCPYCASRFVPSVEGQLCSICELSVVGADASGLLCSPTQSR 113 G+ CP + + P +GQ+C + ++ +G D GL SP Q R Sbjct: 1179 GKPVEKCPLSGACYSPEFKGQICRVTTVTEIGKDVIGLRISPLQFR 1224
>TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)| Length = 1287 Score = 33.5 bits (75), Expect = 0.15 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 8/60 (13%) Frame = -1 Query: 252 AGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGR--------TPQASSAPLHNRDKISGD 97 AGR P P + GSCP +R+ A +R GR TP+A ++P R G+ Sbjct: 522 AGRCLLPRPKSLAGSCPSTRLLTLEEAQARTQGRLGTPTEPTTPKAPASPAERRKGERGE 581
>SYFM_DROME (O16129) Probable phenylalanyl-tRNA synthetase, mitochondrial| precursor (EC 6.1.1.20) (Phenylalanine--tRNA ligase) (PheRS) Length = 453 Score = 31.6 bits (70), Expect = 0.56 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -1 Query: 240 TSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASS 133 +S AP P S PQ VS + YA+ W+ TP+ S Sbjct: 22 SSAAPAKSPSSPPQLEVSGSTYATDGWTNVTPKILS 57
>SEM4D_MOUSE (O09126) Semaphorin-4D precursor (Semaphorin J) (Sema J)| (Semaphorin C-like 2) (M-Sema G) Length = 861 Score = 30.0 bits (66), Expect = 1.6 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = -1 Query: 246 RRTSPAPTARPGSCPQSRVSCAAYASS 166 R P PT RPG+C S A Y SS Sbjct: 357 RYNGPVPTPRPGACIDSEARAANYTSS 383
>TCGAP_MOUSE (Q80YF9) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)| Length = 1305 Score = 28.9 bits (63), Expect = 3.7 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 8/56 (14%) Frame = -1 Query: 252 AGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGR--------TPQASSAPLHNRDK 109 AGR P P + GS P +R+ A +R GR TP+ ++P+ R + Sbjct: 546 AGRCLLPRPKSLAGSSPSTRLLTLEEAQARTQGRLGTPTEPTTPKTPASPVERRKR 601
>EPIPL_HUMAN (P58107) Epiplakin (450 kDa epidermal antigen)| Length = 5065 Score = 28.5 bits (62), Expect = 4.8 Identities = 18/40 (45%), Positives = 20/40 (50%) Frame = +2 Query: 125 RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 244 R EA RPD RE AA + + G GRAV DVL Sbjct: 4612 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 4651 Score = 28.5 bits (62), Expect = 4.8 Identities = 18/40 (45%), Positives = 20/40 (50%) Frame = +2 Query: 125 RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 244 R EA RPD RE AA + + G GRAV DVL Sbjct: 4078 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 4117 Score = 28.5 bits (62), Expect = 4.8 Identities = 18/40 (45%), Positives = 20/40 (50%) Frame = +2 Query: 125 RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 244 R EA RPD RE AA + + G GRAV DVL Sbjct: 3544 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 3583 Score = 28.5 bits (62), Expect = 4.8 Identities = 18/40 (45%), Positives = 20/40 (50%) Frame = +2 Query: 125 RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 244 R EA RPD RE AA + + G GRAV DVL Sbjct: 3010 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 3049 Score = 28.5 bits (62), Expect = 4.8 Identities = 18/40 (45%), Positives = 20/40 (50%) Frame = +2 Query: 125 RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 244 R EA RPD RE AA + + G GRAV DVL Sbjct: 2476 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 2515
>SFR17_HUMAN (Q8TF01) Splicing factor, arginine/serine-rich 130| (Serine-arginine-rich splicing regulatory protein 130) (SRrp130) (SR-rich protein) (SR-related protein) Length = 805 Score = 27.7 bits (60), Expect = 8.2 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -1 Query: 237 SPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSAP 127 SP+ +R S S VS ++Y+SS S RT SS+P Sbjct: 517 SPSSNSRTSST-SSTVSSSSYSSSSGSSRTSSRSSSP 552
>SEM4D_HUMAN (Q92854) Semaphorin-4D precursor (Leukocyte activation antigen| CD100) (BB18) (A8) (GR3) Length = 862 Score = 27.7 bits (60), Expect = 8.2 Identities = 12/27 (44%), Positives = 13/27 (48%) Frame = -1 Query: 246 RRTSPAPTARPGSCPQSRVSCAAYASS 166 R P P RPG+C S A Y SS Sbjct: 357 RYNGPVPKPRPGACIDSEARAANYTSS 383
>CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor| Length = 689 Score = 27.7 bits (60), Expect = 8.2 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Frame = -1 Query: 252 AGRRTSPAPTARPGSC-PQSRVSCAAYASSR 163 AGR P P PG C P + + +AYAS+R Sbjct: 649 AGRPGLPGPVGLPGFCEPAACLGASAYASAR 679
>NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3 precursor| (N-methyl D-aspartate receptor subtype 2C) (NR2C) (NMDAR2C) Length = 1239 Score = 27.7 bits (60), Expect = 8.2 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 6/43 (13%) Frame = -1 Query: 243 RTSPAPTARPGSC---PQ---SRVSCAAYASSRWSGRTPQASS 133 R +P P ARP +C PQ SR SC +RW R S Sbjct: 965 RRAPQPPARPATCAGSPQPDVSRASCRHAWDARWPVRVGHQGS 1007 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,839,568 Number of Sequences: 219361 Number of extensions: 501460 Number of successful extensions: 1886 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1810 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1883 length of database: 80,573,946 effective HSP length: 59 effective length of database: 67,631,647 effective search space used: 1623159528 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
