ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl47e10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 490 bits (247), Expect = e-135 Identities = 250/251 (99%) Strand = Plus / Plus Query: 2 aaaaatctctggtaggtagaatataactgacacaacagtcttcgaactggagatacaaac 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 840 aaaaatctctggtaggtagaatataactgacacaacagtcttcgaactggagatacaaac 899 Query: 62 atgatgaacacggaggtgaagccacaatagtcgtcgtcgccacttatcttatctcgattg 121 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 900 atgatgaacacggaggtgaagccacaatagtcgtcgttgccacttatcttatctcgattg 959 Query: 122 tgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgagagctcgcatatgct 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 960 tgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgagagctcgcatatgct 1019 Query: 182 gcacagctgaccctcgactgagggcacgaaccgggacgcgcagtaggggcaggagacgtc 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1020 gcacagctgaccctcgactgagggcacgaaccgggacgcgcagtaggggcaggagacgtc 1079 Query: 242 cttctgcccgc 252 ||||||||||| Sbjct: 1080 cttctgcccgc 1090
>gb|AF176226.1|AF176226 Triticum aestivum COP alpha homolog mRNA, partial cds Length = 1826 Score = 75.8 bits (38), Expect = 6e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 118 attgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgagagctcgcata 177 |||||||||||||||| |||||||| ||||||||||| |||||||| | |||||||||| Sbjct: 1591 attgtgtaggggagcacaggaggcccgaggcgtccgcgccgaccacagccagctcgcata 1532 Query: 178 tg 179 || Sbjct: 1531 tg 1530
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 9e-07 Identities = 112/139 (80%) Strand = Plus / Plus Query: 109 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 168 |||||||||| || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 28424885 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 28424944 Query: 169 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 228 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 28424945 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 28425004 Query: 229 ggcaggagacgtccttctg 247 ||||||| || |||||||| Sbjct: 28425005 ggcaggaaacatccttctg 28425023
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 9e-07 Identities = 112/139 (80%) Strand = Plus / Plus Query: 109 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 168 |||||||||| || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 28516209 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 28516268 Query: 169 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 228 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 28516269 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 28516328 Query: 229 ggcaggagacgtccttctg 247 ||||||| || |||||||| Sbjct: 28516329 ggcaggaaacatccttctg 28516347
>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete sequence Length = 143681 Score = 61.9 bits (31), Expect = 9e-07 Identities = 112/139 (80%) Strand = Plus / Plus Query: 109 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 168 |||||||||| || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 19015 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 19074 Query: 169 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 228 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 19075 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 19134 Query: 229 ggcaggagacgtccttctg 247 ||||||| || |||||||| Sbjct: 19135 ggcaggaaacatccttctg 19153
>dbj|AK100286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075G08, full insert sequence Length = 4221 Score = 61.9 bits (31), Expect = 9e-07 Identities = 112/139 (80%) Strand = Plus / Minus Query: 109 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 168 |||||||||| || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 3802 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 3743 Query: 169 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 228 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 3742 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 3683 Query: 229 ggcaggagacgtccttctg 247 ||||||| || |||||||| Sbjct: 3682 ggcaggaaacatccttctg 3664
>dbj|AK059218.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-C10, full insert sequence Length = 1032 Score = 61.9 bits (31), Expect = 9e-07 Identities = 112/139 (80%) Strand = Plus / Minus Query: 109 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 168 |||||||||| || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 906 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 847 Query: 169 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 228 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 846 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 787 Query: 229 ggcaggagacgtccttctg 247 ||||||| || |||||||| Sbjct: 786 ggcaggaaacatccttctg 768
>ref|XM_469513.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3657 Score = 60.0 bits (30), Expect = 4e-06 Identities = 111/138 (80%) Strand = Plus / Minus Query: 110 ttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgagag 169 ||||||||| || ||||||||||||||||||||||| || || || || ||||| | || Sbjct: 3657 ttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaag 3598 Query: 170 ctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtaggg 229 ||| |||||| | || ||||| || |||| || || || |||||||| | ||||| || Sbjct: 3597 ctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacgg 3538 Query: 230 gcaggagacgtccttctg 247 |||||| || |||||||| Sbjct: 3537 gcaggaaacatccttctg 3520
>ref|XM_450153.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1736 Score = 54.0 bits (27), Expect = 2e-04 Identities = 111/139 (79%) Strand = Plus / Minus Query: 109 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 168 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 1516 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 1457 Query: 169 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 228 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 1456 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 1397 Query: 229 ggcaggagacgtccttctg 247 ||||||| || |||||||| Sbjct: 1396 ggcaggaaacatccttctg 1378
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 54.0 bits (27), Expect = 2e-04 Identities = 111/139 (79%) Strand = Plus / Plus Query: 109 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 168 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 2074192 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 2074251 Query: 169 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 228 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 2074252 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 2074311 Query: 229 ggcaggagacgtccttctg 247 ||||||| || |||||||| Sbjct: 2074312 ggcaggaaacatccttctg 2074330
>dbj|AP005680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1352_A10 Length = 111655 Score = 54.0 bits (27), Expect = 2e-04 Identities = 111/139 (79%) Strand = Plus / Plus Query: 109 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 168 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 109559 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 109618 Query: 169 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 228 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 109619 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 109678 Query: 229 ggcaggagacgtccttctg 247 ||||||| || |||||||| Sbjct: 109679 ggcaggaaacatccttctg 109697
>dbj|AK105672.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A08, full insert sequence Length = 3045 Score = 54.0 bits (27), Expect = 2e-04 Identities = 111/139 (79%) Strand = Plus / Minus Query: 109 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 168 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 2581 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 2522 Query: 169 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 228 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 2521 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 2462 Query: 229 ggcaggagacgtccttctg 247 ||||||| || |||||||| Sbjct: 2461 ggcaggaaacatccttctg 2443
>dbj|AK103786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145I16, full insert sequence Length = 4284 Score = 54.0 bits (27), Expect = 2e-04 Identities = 111/139 (79%) Strand = Plus / Minus Query: 109 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 168 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 3885 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 3826 Query: 169 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 228 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 3825 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 3766 Query: 229 ggcaggagacgtccttctg 247 ||||||| || |||||||| Sbjct: 3765 ggcaggaaacatccttctg 3747
>dbj|AK058402.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-B07, full insert sequence Length = 1736 Score = 54.0 bits (27), Expect = 2e-04 Identities = 111/139 (79%) Strand = Plus / Minus Query: 109 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 168 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 1516 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 1457 Query: 169 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 228 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 1456 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 1397 Query: 229 ggcaggagacgtccttctg 247 ||||||| || |||||||| Sbjct: 1396 ggcaggaaacatccttctg 1378
>gb|AY104039.1| Zea mays PCO096800 mRNA sequence Length = 1207 Score = 46.1 bits (23), Expect = 0.053 Identities = 32/35 (91%) Strand = Plus / Minus Query: 123 gtaggggagcagaggaggcctgaggcgtccgcccc 157 ||||||||||||| |||||||||||||| ||||| Sbjct: 880 gtaggggagcagaccaggcctgaggcgtctgcccc 846
>gb|AC157556.12| Mus musculus chromosome 1, clone RP24-267A19, complete sequence Length = 198267 Score = 42.1 bits (21), Expect = 0.82 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 gaactggagatacaaacatga 65 ||||||||||||||||||||| Sbjct: 145020 gaactggagatacaaacatga 145000
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 tcgtcgtcgccacttatctt 111 |||||||||||||||||||| Sbjct: 3481636 tcgtcgtcgccacttatctt 3481617
>gb|AC005021.1| Homo sapiens BAC clone GS1-293C5 from 7, complete sequence Length = 64607 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aaaaatctctggtaggtaga 21 |||||||||||||||||||| Sbjct: 61607 aaaaatctctggtaggtaga 61626
>gb|AC079059.10| Homo sapiens chromosome 18, clone RP11-281L12, complete sequence Length = 145993 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 125 aggggagcagaggaggcctgaggcgtcc 152 |||| |||||||||||| |||||||||| Sbjct: 90006 agggcagcagaggaggcatgaggcgtcc 89979
>gb|AC021594.9| Homo sapiens, clone RP11-154H12, complete sequence Length = 162336 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 125 aggggagcagaggaggcctgaggcgtcc 152 |||| |||||||||||| |||||||||| Sbjct: 97972 agggcagcagaggaggcatgaggcgtcc 97945
>gb|AC109636.3| Homo sapiens BAC clone RP11-19D21 from 4, complete sequence Length = 71715 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaaaatctctggtaggtag 20 |||||||||||||||||||| Sbjct: 42043 aaaaaatctctggtaggtag 42062
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 tcgtcgtcgccacttatctt 111 |||||||||||||||||||| Sbjct: 4291068 tcgtcgtcgccacttatctt 4291087
>gb|AY210982.1| Homo sapiens paraoxonase 2 (PON2) gene, complete cds Length = 32705 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aaaaatctctggtaggtaga 21 |||||||||||||||||||| Sbjct: 2452 aaaaatctctggtaggtaga 2433
>ref|XM_308807.2| Anopheles gambiae str. PEST ENSANGP00000021654 (ENSANGG00000019165), partial mRNA Length = 2516 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 ggcgtccgccccgaccaccg 165 |||||||||||||||||||| Sbjct: 1017 ggcgtccgccccgaccaccg 998 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,636,261 Number of Sequences: 3902068 Number of extensions: 1636261 Number of successful extensions: 29042 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28972 Number of HSP's gapped (non-prelim): 70 length of query: 252 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 230 effective length of database: 17,147,199,772 effective search space: 3943855947560 effective search space used: 3943855947560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
