>ZN563_HUMAN (Q8TA94) Zinc finger protein 563|
          Length = 476

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +2

Query: 110 KSFTCH---QQEPLPRSGQEIRCC*CCGNRYQSKDNRLLHMAALQQQHDPNEDGTRPHKC 280
           K+F+ H   Q    P +G++   C  CG  + S+ N   HM          + G RP+KC
Sbjct: 148 KAFSYHHSFQSRGRPHTGKKRYECKECGKTFSSRRNLRRHMVV--------QGGNRPYKC 199

>LRP12_HUMAN (Q9Y561) Low-density lipoprotein receptor-related protein 12|
           precursor (Suppressor of tumorigenicity protein 7)
          Length = 859

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/57 (24%), Positives = 22/57 (38%)
 Frame = +2

Query: 110 KSFTCHQQEPLPRSGQEIRCC*CCGNRYQSKDNRLLHMAALQQQHDPNEDGTRPHKC 280
           +S  C+ Q   P    E  C  C    +  K+NR +  + +    D   DG+    C
Sbjct: 429 RSDRCNYQNHCPNGSDEKNCFFCQPGNFHCKNNRCVFESWVCDSQDDCGDGSDEENC 485

>CTCF_MOUSE (Q61164) Transcriptional repressor CTCF (CCCTC-binding factor)|
           (CTCFL paralog) (11-zinc finger protein)
          Length = 736

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
 Frame = +2

Query: 113 SFTCHQQEPLPR-----SGQEIRCC*CCGNRYQSKDNRLLHMAALQQQHDPNEDGTRPHK 277
           S+TC ++  L R     + +    C  CG  +++          L + H     GTRPHK
Sbjct: 272 SYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRT--------VTLLRNHLNTHTGTRPHK 323

Query: 278 C 280
           C
Sbjct: 324 C 324

>LRP12_MOUSE (Q8BUJ9) Low-density lipoprotein receptor-related protein 12|
           precursor
          Length = 858

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/57 (24%), Positives = 22/57 (38%)
 Frame = +2

Query: 110 KSFTCHQQEPLPRSGQEIRCC*CCGNRYQSKDNRLLHMAALQQQHDPNEDGTRPHKC 280
           +S  C+ Q   P    E  C  C    +  K+NR +  + +    D   DG+    C
Sbjct: 429 RSDRCNYQNHCPNGSDEKNCFFCQPGNFHCKNNRCVFESWVCDSQDDCGDGSDEENC 485

>CTCF_HUMAN (P49711) Transcriptional repressor CTCF (CCCTC-binding factor)|
           (CTCFL paralog) (11-zinc finger protein)
          Length = 727

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
 Frame = +2

Query: 113 SFTCHQQEPLPR-----SGQEIRCC*CCGNRYQSKDNRLLHMAALQQQHDPNEDGTRPHK 277
           S+TC ++  L R     + +    C  CG  +++          L + H     GTRPHK
Sbjct: 272 SYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRT--------VTLLRNHLNTHTGTRPHK 323

Query: 278 C 280
           C
Sbjct: 324 C 324

>LRP12_MACFA (Q9BE74) Low-density lipoprotein receptor-related protein 12|
           (Fragment)
          Length = 701

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/57 (24%), Positives = 22/57 (38%)
 Frame = +2

Query: 110 KSFTCHQQEPLPRSGQEIRCC*CCGNRYQSKDNRLLHMAALQQQHDPNEDGTRPHKC 280
           +S  C+ Q   P    E  C  C    +  K+NR +  + +    D   DG+    C
Sbjct: 271 RSDRCNYQNHCPNGSDEKNCFFCQPGNFHCKNNRCVFESWVCDSQDDCGDGSDEENC 327

>CTCF_CHICK (Q08705) Transcriptional repressor CTCF (CCCTC-binding factor)|
           (CTCFL paralog) (11-zinc finger protein)
          Length = 728

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
 Frame = +2

Query: 113 SFTCHQQEPLPR-----SGQEIRCC*CCGNRYQSKDNRLLHMAALQQQHDPNEDGTRPHK 277
           S+TC ++  L R     + +    C  CG  +++          L + H     GTRPHK
Sbjct: 272 SYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRT--------VTLLRNHLNTHTGTRPHK 323

Query: 278 C 280
           C
Sbjct: 324 C 324

>CTCF_RAT (Q9R1D1) Transcriptional repressor CTCF (CCCTC-binding factor)|
           (CTCFL paralog) (11-zinc finger protein)
          Length = 737

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
 Frame = +2

Query: 113 SFTCHQQEPLPR-----SGQEIRCC*CCGNRYQSKDNRLLHMAALQQQHDPNEDGTRPHK 277
           S+TC ++  L R     + +    C  CG  +++          L + H     GTRPHK
Sbjct: 272 SYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRT--------VTLLRNHLNTHTGTRPHK 323

Query: 278 C 280
           C
Sbjct: 324 C 324

>ZN366_HUMAN (Q8N895) Zinc finger protein 366|
          Length = 744

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 140 LPRSGQEIRCC*CCGNRYQSKDNRLLHMAALQQQHDPNEDGTRPHKC 280
           L  SG +   C  CG  ++   +   HM   Q        GTRPHKC
Sbjct: 273 LGHSGIKPHACTHCGKLFKQLSHLHTHMLTHQ--------GTRPHKC 311

>ZN672_MOUSE (Q99LH4) Zinc finger protein 672|
          Length = 468

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +2

Query: 146 RSGQEIRCC*CCGNRYQSKDNRLLHMAALQQQHDPNEDGTRPHKC 280
           R     R C  CG R+      LLH A   +QH P     +PH+C
Sbjct: 94  RRRSRTRPCRLCGRRFPHVPALLLHRA---RQHPPE----KPHRC 131

>Y4587_PSEPK (Q88E79) UPF0260 protein PP4587|
          Length = 150

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 179 CGNRYQSKDNRLLHMAALQQQHDPNEDGTRPHKCLR 286
           CG+R Q  + R+     +  +HD +ED    H   R
Sbjct: 113 CGDRQQVHEQRISQSGRMLSEHDVHEDDWEDHLIFR 148


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,073,896
Number of Sequences: 219361
Number of extensions: 882022
Number of successful extensions: 1987
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1987
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)