Clone Name | rbastl47e07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP001351.5| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2383M3, complete sequence Length = 90738 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Plus Query: 242 catgacccaaatgaagatggcacc 265 |||||||||||||||||||||||| Sbjct: 8032 catgacccaaatgaagatggcacc 8055
>dbj|AP000620.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-36F4, complete sequences Length = 121878 Score = 48.1 bits (24), Expect = 0.021 Identities = 24/24 (100%) Strand = Plus / Plus Query: 242 catgacccaaatgaagatggcacc 265 |||||||||||||||||||||||| Sbjct: 115521 catgacccaaatgaagatggcacc 115544
>ref|XM_429718.1| PREDICTED: Gallus gallus LOC419911 (LOC419911), mRNA Length = 1263 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 222 tggcagcactgcagcagcagca 243 |||||||||||||||||||||| Sbjct: 323 tggcagcactgcagcagcagca 344
>emb|CR937052.2| Rattus norvegicus chromosome 1 BAC CH230-445C15, complete sequence Length = 151854 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 106 agcaaaatcatttacatgcca 126 ||||||||||||||||||||| Sbjct: 123052 agcaaaatcatttacatgcca 123032
>gb|AC167439.2| Mus musculus BAC clone RP23-461M17 from chromosome 3, complete sequence Length = 175414 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctttagcatttacaatcttg 50 |||||||||||||||||||| Sbjct: 79231 ctttagcatttacaatcttg 79250
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 agccactgccacgctcgggg 154 |||||||||||||||||||| Sbjct: 1968239 agccactgccacgctcgggg 1968220
>gb|AC113283.13| Mus musculus chromosome 3, clone RP23-397I12, complete sequence Length = 189865 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctttagcatttacaatcttg 50 |||||||||||||||||||| Sbjct: 47402 ctttagcatttacaatcttg 47383
>gb|AC153572.13| Mus musculus 10 BAC RP23-187O15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210950 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 caaatgcttgagggtcatgg 293 |||||||||||||||||||| Sbjct: 6414 caaatgcttgagggtcatgg 6395
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence Length = 236455 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 actgcagcagcagcatgacc 248 |||||||||||||||||||| Sbjct: 57113 actgcagcagcagcatgacc 57132
>gb|AF267536.2| Takifugu rubripes NKX2.9 (nkx2.9) gene, exons 1 and 2 and complete cds; and Pax9 (pax9) gene, exons 1 through 4 and complete cds Length = 24431 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gcagcactgcagcagcagca 243 |||||||||||||||||||| Sbjct: 4335 gcagcactgcagcagcagca 4354
>gb|AC026202.7| Homo sapiens chromosome 3 clone RP11-572B2 map 3p, complete sequence Length = 204248 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 cattcagcaaaatcatttac 120 |||||||||||||||||||| Sbjct: 117460 cattcagcaaaatcatttac 117441
>gb|AC079113.4| Homo sapiens BAC clone RP11-81E15 from 7, complete sequence Length = 94669 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 37 catttacaatcttgtacaatcacc 60 |||||||||| ||||||||||||| Sbjct: 65772 catttacaatattgtacaatcacc 65795
>gb|BT009974.1| Drosophila melanogaster RE58428 full insert cDNA Length = 3875 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gcagcactgcagcagcagca 243 |||||||||||||||||||| Sbjct: 1550 gcagcactgcagcagcagca 1569
>gb|AC159325.13| Mus musculus 10 BAC RP23-382A21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 201815 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 caaatgcttgagggtcatgg 293 |||||||||||||||||||| Sbjct: 75407 caaatgcttgagggtcatgg 75426
>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence Length = 134102 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gcagcactgcagcagcagca 243 |||||||||||||||||||| Sbjct: 36390 gcagcactgcagcagcagca 36409
>ref|NM_164944.1| Drosophila melanogaster CG31869-RA (CG31869), mRNA Length = 2754 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gcagcactgcagcagcagca 243 |||||||||||||||||||| Sbjct: 1442 gcagcactgcagcagcagca 1461
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gcagcactgcagcagcagca 243 |||||||||||||||||||| Sbjct: 20396242 gcagcactgcagcagcagca 20396261
>gb|AC007147.8|AC007147 Drosophila melanogaster, chromosome 2L, region 32A-, BAC clone BACR19N18, complete sequence Length = 196248 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gcagcactgcagcagcagca 243 |||||||||||||||||||| Sbjct: 143337 gcagcactgcagcagcagca 143356
>gb|AC026203.3|AC026203 Homo sapiens chromosome 3 clone RP11-586C2 map 3p, complete sequence Length = 181164 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 cattcagcaaaatcatttac 120 |||||||||||||||||||| Sbjct: 118001 cattcagcaaaatcatttac 117982
>gb|AC018821.4|AC018821 Homo sapiens chromosome 3 clone RP11-294H24 map 3p, complete sequence Length = 153879 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 cattcagcaaaatcatttac 120 |||||||||||||||||||| Sbjct: 26726 cattcagcaaaatcatttac 26707
>gb|AC026164.5|AC026164 Homo sapiens chromosome 3 clone RP11-116K5 map 3p, complete sequence Length = 155769 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 cattcagcaaaatcatttac 120 |||||||||||||||||||| Sbjct: 74659 cattcagcaaaatcatttac 74640
>gb|AE003630.2| Drosophila melanogaster chromosome 2L, section 39 of 83 of the complete sequence Length = 289460 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gcagcactgcagcagcagca 243 |||||||||||||||||||| Sbjct: 6304 gcagcactgcagcagcagca 6285
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gcagcactgcagcagcagca 243 |||||||||||||||||||| Sbjct: 20407514 gcagcactgcagcagcagca 20407533
>emb|BX284685.8| Mouse DNA sequence from clone RP23-114J1 on chromosome 2, complete sequence Length = 69833 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ttacaatcttgtacaatcac 59 |||||||||||||||||||| Sbjct: 48099 ttacaatcttgtacaatcac 48118 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,956,290 Number of Sequences: 3902068 Number of extensions: 3956290 Number of successful extensions: 80070 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79960 Number of HSP's gapped (non-prelim): 110 length of query: 381 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 359 effective length of database: 17,147,199,772 effective search space: 6155844718148 effective search space used: 6155844718148 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)