ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NEUM_BUFJA (P08162) Mesotocin-neurophysin MT precursor [Contains... 31 0.90
2LPXA_SYNY3 (Q55746) Acyl-[acyl-carrier-protein]--UDP-N-acetylglu... 28 5.8
3APLP_MANSE (Q25490) Apolipophorins precursor [Contains: Apolipop... 27 10.0

>NEUM_BUFJA (P08162) Mesotocin-neurophysin MT precursor [Contains: Mesotocin|
           (MT); Neurophysin MT]
          Length = 125

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 34  TPCFSSRKPPINTGPHTHLSKLCCAHDS 117
           +PC S RKP  N G +   S +CC H+S
Sbjct: 84  SPCESGRKPCGNNGGNCARSGICCNHES 111



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>LPXA_SYNY3 (Q55746) Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine|
           O-acyltransferase (EC 2.3.1.129)
           (UDP-N-acetylglucosamine acyltransferase)
          Length = 276

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +2

Query: 14  LSKKREVRHVSLVGNRRLTLAHTHISQNCAV 106
           +++  E   V+ +G+R L +A+ H++ NC +
Sbjct: 106 INRATEEGAVTRIGDRNLLMAYAHVAHNCVI 136



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>APLP_MANSE (Q25490) Apolipophorins precursor [Contains: Apolipophorin-2|
            (Apolipophorin II) (apoLp-2); Apolipophorin-1
            (Apolipophorin I) (apoLp-1)]
          Length = 3305

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 35   RHVSLVGNRRLTLAHTHISQNCAVLM 112
            RH++  G  R  L H H+ +N  VLM
Sbjct: 2749 RHLTFPGTCRYVLIHDHVDRNFTVLM 2774


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,900,654
Number of Sequences: 219361
Number of extensions: 589916
Number of successful extensions: 1376
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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