Clone Name | rbastl47d11 |
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Clone Library Name | barley_pub |
>dbj|AK121066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060D18, full insert sequence Length = 3413 Score = 127 bits (64), Expect = 1e-26 Identities = 130/152 (85%) Strand = Plus / Minus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 3056 gctgcgccagacagtgtattcacaagagcatgaaccagctgctccttcatagatgcatca 2997 Query: 61 ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaagctcgttagaa 120 ||||| ||||| ||||||||||| ||||||| ||||| |||||||||||| || || | Sbjct: 2996 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaagatcattctga 2937 Query: 121 tcgccaataaggtgagaaaaggcttcctgaat 152 || |||| |||||| | || |||||||||||| Sbjct: 2936 tcaccaagaaggtgggtaagggcttcctgaat 2905
>dbj|AK105296.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-G12, full insert sequence Length = 2916 Score = 127 bits (64), Expect = 1e-26 Identities = 130/152 (85%) Strand = Plus / Minus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 267 gctgcgccagacagtgtattcacgagagcatgaaccagctgctccttcatagatgcatca 208 Query: 61 ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaagctcgttagaa 120 ||||| ||||| ||||||||||| ||||||| ||||| |||||||||||| || || | Sbjct: 207 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaagatcattctga 148 Query: 121 tcgccaataaggtgagaaaaggcttcctgaat 152 || |||| |||||| | || |||||||||||| Sbjct: 147 tcaccaagaaggtgggtaagggcttcctgaat 116
>dbj|AK065453.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023D11, full insert sequence Length = 3286 Score = 127 bits (64), Expect = 1e-26 Identities = 130/152 (85%) Strand = Plus / Minus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 2929 gctgcgccagacagtgtattcacaagagcatgaaccagctgctccttcatagatgcatca 2870 Query: 61 ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaagctcgttagaa 120 ||||| ||||| ||||||||||| ||||||| ||||| |||||||||||| || || | Sbjct: 2869 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaagatcattctga 2810 Query: 121 tcgccaataaggtgagaaaaggcttcctgaat 152 || |||| |||||| | || |||||||||||| Sbjct: 2809 tcaccaagaaggtgggtaagggcttcctgaat 2778
>gb|AC123528.2| Oryza sativa chromosome 11 clone OSJNBa0078E03, complete sequence Length = 149493 Score = 123 bits (62), Expect = 2e-25 Identities = 98/110 (89%) Strand = Plus / Plus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 81678 gctgcgccagacagtgtattcacaagagcatgaaccagctgctccttcatagatgcatca 81737 Query: 61 ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaag 110 ||||| ||||| ||||||||||| ||||||| ||||| |||||||||||| Sbjct: 81738 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaag 81787
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 123 bits (62), Expect = 2e-25 Identities = 98/110 (89%) Strand = Plus / Plus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 1680775 gctgcgccagacagtgtattcacgagagcatgaaccagctgctccttcatagatgcatca 1680834 Query: 61 ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaag 110 ||||| ||||| ||||||||||| ||||||| ||||| |||||||||||| Sbjct: 1680835 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaag 1680884
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 123 bits (62), Expect = 2e-25 Identities = 98/110 (89%) Strand = Plus / Plus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 1726671 gctgcgccagacagtgtattcacaagagcatgaaccagctgctccttcatagatgcatca 1726730 Query: 61 ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaag 110 ||||| ||||| ||||||||||| ||||||| ||||| |||||||||||| Sbjct: 1726731 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaag 1726780
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 123 bits (62), Expect = 2e-25 Identities = 98/110 (89%) Strand = Plus / Plus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 1724392 gctgcgccagacagtgtattcacaagagcatgaaccagctgctccttcatagatgcatca 1724451 Query: 61 ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaag 110 ||||| ||||| ||||||||||| ||||||| ||||| |||||||||||| Sbjct: 1724452 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaag 1724501
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 123 bits (62), Expect = 2e-25 Identities = 98/110 (89%) Strand = Plus / Plus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 1680753 gctgcgccagacagtgtattcacgagagcatgaaccagctgctccttcatagatgcatca 1680812 Query: 61 ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaag 110 ||||| ||||| ||||||||||| ||||||| ||||| |||||||||||| Sbjct: 1680813 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaag 1680862
>emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104307 Score = 123 bits (62), Expect = 2e-25 Identities = 98/110 (89%) Strand = Plus / Minus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 86146 gctgcgccagacagtgtattcacgagagcatgaaccagctgctccttcatagatgcatca 86087 Query: 61 ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaag 110 ||||| ||||| ||||||||||| ||||||| ||||| |||||||||||| Sbjct: 86086 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaag 86037
>emb|BX000508.1|CNS08CDY Oryza sativa chromosome 12, . BAC OJ1575_G05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 91883 Score = 123 bits (62), Expect = 2e-25 Identities = 98/110 (89%) Strand = Plus / Minus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 12149 gctgcgccagacagtgtattcacgagagcatgaaccagctgctccttcatagatgcatca 12090 Query: 61 ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaag 110 ||||| ||||| ||||||||||| ||||||| ||||| |||||||||||| Sbjct: 12089 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaag 12040
>emb|CT009655.2| Medicago truncatula chromosome 5 clone mth2-121g11, COMPLETE SEQUENCE Length = 126690 Score = 54.0 bits (27), Expect = 1e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 45 tttcatagaagcatcaccaagttcatacacaatactcataccttggggtgccaaatcttg 104 ||||||||| ||||||| || ||||||||||||||||| ||||| | ||||| ||||| Sbjct: 44254 tttcatagattcatcacctaggtcatacacaatactcatgccttgagaagccaactcttg 44195 Query: 105 tgt 107 ||| Sbjct: 44194 tgt 44192
>emb|AL138810.10| Human DNA sequence from clone RP1-179L10 on chromosome 11p12-14.1 Contains a gene encoding the dihydroxylipoamide dehydrogenase-binding protein of pyruvate dehydrogenase complex (E3-binding protein), a gene similar to the CGI-29 protein, a CpG island, ESTs, STSs and GSSs, complete sequence Length = 128228 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 taaggtgagaaaaggcttcct 148 ||||||||||||||||||||| Sbjct: 68148 taaggtgagaaaaggcttcct 68168
>emb|AJ298105.1|HSA298105 Homo sapiens PDX1 gene for lipoyl-containing component X, exons 1-11 Length = 128228 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 taaggtgagaaaaggcttcct 148 ||||||||||||||||||||| Sbjct: 60081 taaggtgagaaaaggcttcct 60061
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 caccagtgcatgaaccaactgccc 44 |||||||||| ||||||||||||| Sbjct: 18367888 caccagtgcaagaaccaactgccc 18367865
>dbj|AP004266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0038F10 Length = 153929 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 caccagtgcatgaaccaactgccc 44 |||||||||| ||||||||||||| Sbjct: 97383 caccagtgcaagaaccaactgccc 97360
>gb|AC107774.8| Mus musculus chromosome 5, clone RP23-99A9, complete sequence Length = 227044 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 130 aggtgagaaaaggcttcctgaat 152 |||||||||| |||||||||||| Sbjct: 121825 aggtgagaaagggcttcctgaat 121803
>ref|XM_475041.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2763 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 86 cttggggtgccaaatcttg 104 ||||||||||||||||||| Sbjct: 380 cttggggtgccaaatcttg 362
>gb|AC161510.10| Mus musculus chromosome 5, clone RP23-7M16, complete sequence Length = 195579 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 130 aggtgagaaaaggcttcctgaat 152 |||||||||| |||||||||||| Sbjct: 11386 aggtgagaaagggcttcctgaat 11364
>gb|AC119167.5| Mus musculus chromosome 15, clone RP24-344D17, complete sequence Length = 117222 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 accagtgcatgaaccaact 40 ||||||||||||||||||| Sbjct: 62011 accagtgcatgaaccaact 61993
>gb|AC119168.10| Mus musculus chromosome 15, clone RP24-341L14, complete sequence Length = 134714 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 accagtgcatgaaccaact 40 ||||||||||||||||||| Sbjct: 134374 accagtgcatgaaccaact 134392
>ref|XM_968602.1| PREDICTED: Tribolium castaneum similar to CG16854-PA (LOC662511), mRNA Length = 1938 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 54 agcatcaccaagttcatacacaa 76 ||||||||||||||||| ||||| Sbjct: 217 agcatcaccaagttcatccacaa 239
>emb|AL731605.3|OSJN00246 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042F21, complete sequence Length = 167113 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 86 cttggggtgccaaatcttg 104 ||||||||||||||||||| Sbjct: 89877 cttggggtgccaaatcttg 89895
>gb|AC026391.7| Homo sapiens chromosome 10 clone RP11-135D11, complete sequence Length = 177578 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 125 caataaggtgagaaaaggc 143 ||||||||||||||||||| Sbjct: 83775 caataaggtgagaaaaggc 83757
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 atgaaccaactgccctttc 48 ||||||||||||||||||| Sbjct: 3014594 atgaaccaactgccctttc 3014612
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 86 cttggggtgccaaatcttg 104 ||||||||||||||||||| Sbjct: 9005143 cttggggtgccaaatcttg 9005161
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 atgaaccaactgccctttc 48 ||||||||||||||||||| Sbjct: 1281709 atgaaccaactgccctttc 1281691 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,050,059 Number of Sequences: 3902068 Number of extensions: 1050059 Number of successful extensions: 69576 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69389 Number of HSP's gapped (non-prelim): 187 length of query: 155 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 133 effective length of database: 17,147,199,772 effective search space: 2280577569676 effective search space used: 2280577569676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)