ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK121066.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 1e-26
2dbj|AK105296.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 1e-26
3dbj|AK065453.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 1e-26
4gb|AC123528.2| Oryza sativa chromosome 11 clone OSJNBa0078E03, ... 123 2e-25
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 123 2e-25
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 123 2e-25
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 123 2e-25
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 123 2e-25
9emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239... 123 2e-25
10emb|BX000508.1|CNS08CDY Oryza sativa chromosome 12, . BAC OJ1575... 123 2e-25
11emb|CT009655.2| Medicago truncatula chromosome 5 clone mth2-121g... 54 1e-04
12emb|AL138810.10| Human DNA sequence from clone RP1-179L10 on chr... 42 0.48
13emb|AJ298105.1|HSA298105 Homo sapiens PDX1 gene for lipoyl-conta... 42 0.48
14dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.9
15dbj|AP004266.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.9
16gb|AC107774.8| Mus musculus chromosome 5, clone RP23-99A9, compl... 38 7.4
17ref|XM_475041.1| Oryza sativa (japonica cultivar-group), predic... 38 7.4
18gb|AC161510.10| Mus musculus chromosome 5, clone RP23-7M16, comp... 38 7.4
19gb|AC119167.5| Mus musculus chromosome 15, clone RP24-344D17, co... 38 7.4
20gb|AC119168.10| Mus musculus chromosome 15, clone RP24-341L14, c... 38 7.4
21ref|XM_968602.1| PREDICTED: Tribolium castaneum similar to CG168... 38 7.4
22emb|AL731605.3|OSJN00246 Oryza sativa genomic DNA, chromosome 4,... 38 7.4
23gb|AC026391.7| Homo sapiens chromosome 10 clone RP11-135D11, com... 38 7.4
24gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 38 7.4
25dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.4
26gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 38 7.4

>dbj|AK121066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060D18, full
            insert sequence
          Length = 3413

 Score =  127 bits (64), Expect = 1e-26
 Identities = 130/152 (85%)
 Strand = Plus / Minus

                                                                        
Query: 1    gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60
            |||||||||| |||||||||||| || |||||||||| |||| | |||||||| ||||||
Sbjct: 3056 gctgcgccagacagtgtattcacaagagcatgaaccagctgctccttcatagatgcatca 2997

                                                                        
Query: 61   ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaagctcgttagaa 120
            ||||| ||||| ||||||||||| ||||||| ||||| |||||||||||| || ||   |
Sbjct: 2996 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaagatcattctga 2937

                                            
Query: 121  tcgccaataaggtgagaaaaggcttcctgaat 152
            || |||| |||||| | || ||||||||||||
Sbjct: 2936 tcaccaagaaggtgggtaagggcttcctgaat 2905



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>dbj|AK105296.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-G12, full
           insert sequence
          Length = 2916

 Score =  127 bits (64), Expect = 1e-26
 Identities = 130/152 (85%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60
           |||||||||| |||||||||||| || |||||||||| |||| | |||||||| ||||||
Sbjct: 267 gctgcgccagacagtgtattcacgagagcatgaaccagctgctccttcatagatgcatca 208

                                                                       
Query: 61  ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaagctcgttagaa 120
           ||||| ||||| ||||||||||| ||||||| ||||| |||||||||||| || ||   |
Sbjct: 207 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaagatcattctga 148

                                           
Query: 121 tcgccaataaggtgagaaaaggcttcctgaat 152
           || |||| |||||| | || ||||||||||||
Sbjct: 147 tcaccaagaaggtgggtaagggcttcctgaat 116



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>dbj|AK065453.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023D11, full
            insert sequence
          Length = 3286

 Score =  127 bits (64), Expect = 1e-26
 Identities = 130/152 (85%)
 Strand = Plus / Minus

                                                                        
Query: 1    gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60
            |||||||||| |||||||||||| || |||||||||| |||| | |||||||| ||||||
Sbjct: 2929 gctgcgccagacagtgtattcacaagagcatgaaccagctgctccttcatagatgcatca 2870

                                                                        
Query: 61   ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaagctcgttagaa 120
            ||||| ||||| ||||||||||| ||||||| ||||| |||||||||||| || ||   |
Sbjct: 2869 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaagatcattctga 2810

                                            
Query: 121  tcgccaataaggtgagaaaaggcttcctgaat 152
            || |||| |||||| | || ||||||||||||
Sbjct: 2809 tcaccaagaaggtgggtaagggcttcctgaat 2778



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>gb|AC123528.2| Oryza sativa chromosome 11 clone  OSJNBa0078E03, complete sequence
          Length = 149493

 Score =  123 bits (62), Expect = 2e-25
 Identities = 98/110 (89%)
 Strand = Plus / Plus

                                                                         
Query: 1     gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60
             |||||||||| |||||||||||| || |||||||||| |||| | |||||||| ||||||
Sbjct: 81678 gctgcgccagacagtgtattcacaagagcatgaaccagctgctccttcatagatgcatca 81737

                                                               
Query: 61    ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaag 110
             ||||| ||||| ||||||||||| ||||||| ||||| ||||||||||||
Sbjct: 81738 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaag 81787



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  123 bits (62), Expect = 2e-25
 Identities = 98/110 (89%)
 Strand = Plus / Plus

                                                                           
Query: 1       gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60
               |||||||||| |||||||||||| || |||||||||| |||| | |||||||| ||||||
Sbjct: 1680775 gctgcgccagacagtgtattcacgagagcatgaaccagctgctccttcatagatgcatca 1680834

                                                                 
Query: 61      ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaag 110
               ||||| ||||| ||||||||||| ||||||| ||||| ||||||||||||
Sbjct: 1680835 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaag 1680884



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  123 bits (62), Expect = 2e-25
 Identities = 98/110 (89%)
 Strand = Plus / Plus

                                                                           
Query: 1       gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60
               |||||||||| |||||||||||| || |||||||||| |||| | |||||||| ||||||
Sbjct: 1726671 gctgcgccagacagtgtattcacaagagcatgaaccagctgctccttcatagatgcatca 1726730

                                                                 
Query: 61      ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaag 110
               ||||| ||||| ||||||||||| ||||||| ||||| ||||||||||||
Sbjct: 1726731 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaag 1726780



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  123 bits (62), Expect = 2e-25
 Identities = 98/110 (89%)
 Strand = Plus / Plus

                                                                           
Query: 1       gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60
               |||||||||| |||||||||||| || |||||||||| |||| | |||||||| ||||||
Sbjct: 1724392 gctgcgccagacagtgtattcacaagagcatgaaccagctgctccttcatagatgcatca 1724451

                                                                 
Query: 61      ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaag 110
               ||||| ||||| ||||||||||| ||||||| ||||| ||||||||||||
Sbjct: 1724452 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaag 1724501



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  123 bits (62), Expect = 2e-25
 Identities = 98/110 (89%)
 Strand = Plus / Plus

                                                                           
Query: 1       gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60
               |||||||||| |||||||||||| || |||||||||| |||| | |||||||| ||||||
Sbjct: 1680753 gctgcgccagacagtgtattcacgagagcatgaaccagctgctccttcatagatgcatca 1680812

                                                                 
Query: 61      ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaag 110
               ||||| ||||| ||||||||||| ||||||| ||||| ||||||||||||
Sbjct: 1680813 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaag 1680862



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>emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 104307

 Score =  123 bits (62), Expect = 2e-25
 Identities = 98/110 (89%)
 Strand = Plus / Minus

                                                                         
Query: 1     gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60
             |||||||||| |||||||||||| || |||||||||| |||| | |||||||| ||||||
Sbjct: 86146 gctgcgccagacagtgtattcacgagagcatgaaccagctgctccttcatagatgcatca 86087

                                                               
Query: 61    ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaag 110
             ||||| ||||| ||||||||||| ||||||| ||||| ||||||||||||
Sbjct: 86086 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaag 86037



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>emb|BX000508.1|CNS08CDY Oryza sativa chromosome 12, . BAC OJ1575_G05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 91883

 Score =  123 bits (62), Expect = 2e-25
 Identities = 98/110 (89%)
 Strand = Plus / Minus

                                                                         
Query: 1     gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60
             |||||||||| |||||||||||| || |||||||||| |||| | |||||||| ||||||
Sbjct: 12149 gctgcgccagacagtgtattcacgagagcatgaaccagctgctccttcatagatgcatca 12090

                                                               
Query: 61    ccaagttcatacacaatactcataccttggggtgccaaatcttgtgtaag 110
             ||||| ||||| ||||||||||| ||||||| ||||| ||||||||||||
Sbjct: 12089 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaag 12040



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>emb|CT009655.2| Medicago truncatula chromosome 5 clone mth2-121g11, COMPLETE SEQUENCE
          Length = 126690

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                         
Query: 45    tttcatagaagcatcaccaagttcatacacaatactcataccttggggtgccaaatcttg 104
             |||||||||  ||||||| || ||||||||||||||||| ||||| |  ||||| |||||
Sbjct: 44254 tttcatagattcatcacctaggtcatacacaatactcatgccttgagaagccaactcttg 44195

                
Query: 105   tgt 107
             |||
Sbjct: 44194 tgt 44192



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>emb|AL138810.10| Human DNA sequence from clone RP1-179L10 on chromosome 11p12-14.1
             Contains a gene encoding the dihydroxylipoamide
             dehydrogenase-binding protein of pyruvate dehydrogenase
             complex (E3-binding protein), a gene similar to the CGI-29
             protein, a CpG island, ESTs, STSs and GSSs, complete
             sequence
          Length = 128228

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 128   taaggtgagaaaaggcttcct 148
             |||||||||||||||||||||
Sbjct: 68148 taaggtgagaaaaggcttcct 68168



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>emb|AJ298105.1|HSA298105 Homo sapiens PDX1 gene for lipoyl-containing component X, exons 1-11
          Length = 128228

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 128   taaggtgagaaaaggcttcct 148
             |||||||||||||||||||||
Sbjct: 60081 taaggtgagaaaaggcttcct 60061



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 21       caccagtgcatgaaccaactgccc 44
                |||||||||| |||||||||||||
Sbjct: 18367888 caccagtgcaagaaccaactgccc 18367865



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>dbj|AP004266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0038F10
          Length = 153929

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 21    caccagtgcatgaaccaactgccc 44
             |||||||||| |||||||||||||
Sbjct: 97383 caccagtgcaagaaccaactgccc 97360



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>gb|AC107774.8| Mus musculus chromosome 5, clone RP23-99A9, complete sequence
          Length = 227044

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 130    aggtgagaaaaggcttcctgaat 152
              |||||||||| ||||||||||||
Sbjct: 121825 aggtgagaaagggcttcctgaat 121803



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>ref|XM_475041.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2763

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 86  cttggggtgccaaatcttg 104
           |||||||||||||||||||
Sbjct: 380 cttggggtgccaaatcttg 362



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>gb|AC161510.10| Mus musculus chromosome 5, clone RP23-7M16, complete sequence
          Length = 195579

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 130   aggtgagaaaaggcttcctgaat 152
             |||||||||| ||||||||||||
Sbjct: 11386 aggtgagaaagggcttcctgaat 11364



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>gb|AC119167.5| Mus musculus chromosome 15, clone RP24-344D17, complete sequence
          Length = 117222

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    accagtgcatgaaccaact 40
             |||||||||||||||||||
Sbjct: 62011 accagtgcatgaaccaact 61993



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>gb|AC119168.10| Mus musculus chromosome 15, clone RP24-341L14, complete sequence
          Length = 134714

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 22     accagtgcatgaaccaact 40
              |||||||||||||||||||
Sbjct: 134374 accagtgcatgaaccaact 134392



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>ref|XM_968602.1| PREDICTED: Tribolium castaneum similar to CG16854-PA (LOC662511),
           mRNA
          Length = 1938

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 54  agcatcaccaagttcatacacaa 76
           ||||||||||||||||| |||||
Sbjct: 217 agcatcaccaagttcatccacaa 239



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>emb|AL731605.3|OSJN00246 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042F21,
             complete sequence
          Length = 167113

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 86    cttggggtgccaaatcttg 104
             |||||||||||||||||||
Sbjct: 89877 cttggggtgccaaatcttg 89895



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>gb|AC026391.7| Homo sapiens chromosome 10 clone RP11-135D11, complete sequence
          Length = 177578

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 125   caataaggtgagaaaaggc 143
             |||||||||||||||||||
Sbjct: 83775 caataaggtgagaaaaggc 83757



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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 30      atgaaccaactgccctttc 48
               |||||||||||||||||||
Sbjct: 3014594 atgaaccaactgccctttc 3014612



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 86      cttggggtgccaaatcttg 104
               |||||||||||||||||||
Sbjct: 9005143 cttggggtgccaaatcttg 9005161



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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 30      atgaaccaactgccctttc 48
               |||||||||||||||||||
Sbjct: 1281709 atgaaccaactgccctttc 1281691


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,050,059
Number of Sequences: 3902068
Number of extensions: 1050059
Number of successful extensions: 69576
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69389
Number of HSP's gapped (non-prelim): 187
length of query: 155
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 133
effective length of database: 17,147,199,772
effective search space: 2280577569676
effective search space used: 2280577569676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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