ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl47d10 |
|---|---|
| Clone Library Name | barley_pub |
>XYL1_ARATH (Q9S7Y7) Alpha-xylosidase precursor (EC 3.2.1.-)| Length = 915 Score = 34.7 bits (78), Expect = 0.061 Identities = 18/36 (50%), Positives = 23/36 (63%) Frame = -3 Query: 303 GEEDALEGEKRGVTMEVGGLELPLGKSFTMTWNMHI 196 G ED E E + V +EV GLE+ +GK F M+W M I Sbjct: 881 GLED--EEENKSVMVEVRGLEMLVGKDFNMSWKMGI 914
>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response| factor 2) (ERF-2) Length = 492 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 227 FPSGNSSPPTSIVTPLFSPSRASSSPWCITCASAA 331 FPSG+ PP + +PL S S +P +C+SA+ Sbjct: 263 FPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSAS 297
>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding| protein) (NRE-binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1) Length = 2426 Score = 28.5 bits (62), Expect = 4.3 Identities = 22/85 (25%), Positives = 34/85 (40%) Frame = +1 Query: 52 HKLHNRLKHDELLFKLYKFKLDTTTTSRTKKAHADGSRGKCSSILLCFDVHVPCHGEALP 231 HK H K + K K+K + K+H DG+ S L FD LP Sbjct: 111 HKKHKNKKKKKKKEKEKKYKRQPEESESKTKSHDDGNIDLESDSFLKFDSEPSAVALELP 170 Query: 232 QRQLQPANLHRHAPLLALQGVLFSL 306 R P+ + +P + L+ + S+ Sbjct: 171 TRAFGPSETN-ESPAVVLEPPVVSM 194
>SLIT1_RAT (O88279) Slit homolog 1 protein precursor (Slit-1) (Multiple| epidermal growth factor-like domains 4) Length = 1531 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/47 (31%), Positives = 21/47 (44%) Frame = +1 Query: 172 CSSILLCFDVHVPCHGEALPQRQLQPANLHRHAPLLALQGVLFSLVH 312 C ++ C V CHG L Q P N+ R+ L L G + +H Sbjct: 34 CPALCTCTGTTVDCHGTGL---QAIPKNIPRNTERLELNGNNITRIH 77
>SLIT1_MOUSE (Q80TR4) Slit homolog 1 protein precursor (Slit-1)| Length = 1531 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/47 (31%), Positives = 21/47 (44%) Frame = +1 Query: 172 CSSILLCFDVHVPCHGEALPQRQLQPANLHRHAPLLALQGVLFSLVH 312 C ++ C V CHG L Q P N+ R+ L L G + +H Sbjct: 34 CPALCTCTGTTVDCHGTGL---QAIPKNIPRNTERLELNGNNITRIH 77
>SLIT1_HUMAN (O75093) Slit homolog 1 protein precursor (Slit-1) (Multiple| epidermal growth factor-like domains 4) Length = 1534 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/47 (31%), Positives = 21/47 (44%) Frame = +1 Query: 172 CSSILLCFDVHVPCHGEALPQRQLQPANLHRHAPLLALQGVLFSLVH 312 C ++ C V CHG L Q P N+ R+ L L G + +H Sbjct: 34 CPALCTCTGTTVDCHGTGL---QAIPKNIPRNTERLELNGNNITRIH 77
>CB024_RAT (Q6P7B2) Protein C2orf24 homolog| Length = 408 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Frame = +2 Query: 161 AEANAARFSYASMCMFHVMVKLFPSGNSSPPTSIVTP--LFSPSRASSSPWCITCASA 328 A ++ + ASM + H + L S + SPP + P L P + P C+T S+ Sbjct: 238 AYVSSVALAVASMAVIHQSLGLSSSPSPSPPELTLVPKNLLQPCIPAPVPQCLTNVSS 295
>KLF12_MOUSE (O35738) Krueppel-like factor 12 (Transcriptional repressor| AP-2rep) Length = 402 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = +2 Query: 233 SGNSSPPTSIVTPLFSPSRASSSPWCITCASAA 331 +G++S P+S T S SR +SSP IT S A Sbjct: 104 TGSASSPSSTSTSSSSSSRPASSPTVITSVSRA 136
>YBIB_ECOLI (P30177) Hypothetical protein ybiB| Length = 320 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = -3 Query: 312 MHQGEEDALEGEKRGVTMEVGGLELPLGKSFTMTWNMHI 196 +H G+ A E + V M VG PL K M W M + Sbjct: 139 LHGGQAQAKLDEHQPVFMPVGAFCPPLEKQLAMRWRMGV 177
>END3_YEAST (P39013) Protein END3| Length = 349 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/36 (33%), Positives = 23/36 (63%) Frame = +1 Query: 28 VFEGNQPPHKLHNRLKHDELLFKLYKFKLDTTTTSR 135 +F G +P + N++ HD++L LY KLD++ ++ Sbjct: 15 IFSGLKP---IENKVNHDQVLPILYNSKLDSSVLNK 47
>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) (mDIA1) (p140mDIA) Length = 1255 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -3 Query: 306 QGEEDALEGEKRGVTMEVGGLELPLGK 226 QGE+DAL+ EK+ +T + LE + K Sbjct: 508 QGEKDALDSEKQQITAQKQDLEAEVSK 534
>RECU_STRR6 (P0A456) Recombination protein U homolog| Length = 198 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/58 (24%), Positives = 25/58 (43%) Frame = +1 Query: 139 KKAHADGSRGKCSSILLCFDVHVPCHGEALPQRQLQPANLHRHAPLLALQGVLFSLVH 312 ++A G + + F+V A+P + P + +LA QG+ F L+H Sbjct: 77 RQASTTDYSGVYNGYYIDFEVKETKQKRAIPMKNFHPHQIQHMEQVLAQQGICFVLLH 134
>RECU_STRPN (P0A455) Recombination protein U homolog| Length = 198 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/58 (24%), Positives = 25/58 (43%) Frame = +1 Query: 139 KKAHADGSRGKCSSILLCFDVHVPCHGEALPQRQLQPANLHRHAPLLALQGVLFSLVH 312 ++A G + + F+V A+P + P + +LA QG+ F L+H Sbjct: 77 RQASTTDYSGVYNGYYIDFEVKETKQKRAIPMKNFHPHQIQHMEQVLAQQGICFVLLH 134
>DLDH_CANFA (P49819) Dihydrolipoyl dehydrogenase, mitochondrial precursor (EC| 1.8.1.4) (Dihydrolipoamide dehydrogenase) Length = 509 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 6/46 (13%) Frame = +1 Query: 100 YKFKLDTTTTSRTKKAHA------DGSRGKCSSILLCFDVHVPCHG 219 +KFKL+T T TKK+ +G+ G + ++ C DV + C G Sbjct: 270 FKFKLNTKVTGATKKSDGKIDVSIEGASGGKAEVITC-DVLLVCIG 314 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,674,592 Number of Sequences: 219361 Number of extensions: 582010 Number of successful extensions: 2359 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2131 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2358 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
