ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1K1210_HUMAN (Q9ULL0) Protein KIAA1210 29 3.1
2PTH_IDILO (Q5QV03) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH) 28 6.9
3YHN0_YEAST (P38793) Hypothetical 56.5 kDa protein in DYS1-PCL5 i... 28 6.9
4AAA1_RAT (P63116) Asc-type amino acid transporter 1 (Asc-1) (D-s... 27 9.1
5AAA1_MOUSE (P63115) Asc-type amino acid transporter 1 (Asc-1) (D... 27 9.1
6AAA1_HUMAN (Q9NS82) Asc-type amino acid transporter 1 (Asc-1) 27 9.1

>K1210_HUMAN (Q9ULL0) Protein KIAA1210|
          Length = 1093

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 22/74 (29%), Positives = 32/74 (43%)
 Frame = +3

Query: 153 QLFTGHDTVELGSMIAGRKRRLLYPHAASYAANRPSTVTPKQQTSKKF*GKTSLSSSTRP 332
           Q+F+    ++ GS +A      L P+  S + ++P         S     K  +SS   P
Sbjct: 587 QIFSESSALKRGSDVAP-----LPPNLPSKSLSKPEVKHQVFSDSGSANPKGGISSKMLP 641

Query: 333 MKRPLLHLGRKAGP 374
           MK PL  LGR   P
Sbjct: 642 MKHPLQSLGRPEDP 655



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>PTH_IDILO (Q5QV03) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 198

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
 Frame = -2

Query: 370 PALRPRCKSGRFMGLVELLRLVLPQNFLEVCCFGVTVLG---------LLAAYD 236
           P  + +   GR+      LR+VLPQNF+    F V  L          +L AYD
Sbjct: 43  PDTKSKALIGRWQQGAHDLRIVLPQNFMNRSGFSVAALANFYKIPANEILVAYD 96



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>YHN0_YEAST (P38793) Hypothetical 56.5 kDa protein in DYS1-PCL5 intergenic|
           region
          Length = 499

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 322 ELLRLVLPQNFLEVCCFGVTVLGLLA 245
           E+LR VLP+ FLE    G T+ G +A
Sbjct: 160 EILRAVLPEQFLEEVPTGFTITGHIA 185



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>AAA1_RAT (P63116) Asc-type amino acid transporter 1 (Asc-1) (D-serine|
           transporter)
          Length = 530

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 370 PALRPRCKSGRFMGLV-ELLRLVLPQNFLEVCCFGVTVLGLL 248
           PAL   C +   + LV +   L+   +F+   C+GVT+LGLL
Sbjct: 372 PALLVCCGATAVIMLVGDTYTLINYVSFINYLCYGVTILGLL 413



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>AAA1_MOUSE (P63115) Asc-type amino acid transporter 1 (Asc-1) (D-serine|
           transporter)
          Length = 530

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 370 PALRPRCKSGRFMGLV-ELLRLVLPQNFLEVCCFGVTVLGLL 248
           PAL   C +   + LV +   L+   +F+   C+GVT+LGLL
Sbjct: 372 PALLVCCGATAVIMLVGDTYTLINYVSFINYLCYGVTILGLL 413



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>AAA1_HUMAN (Q9NS82) Asc-type amino acid transporter 1 (Asc-1)|
          Length = 523

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 370 PALRPRCKSGRFMGLV-ELLRLVLPQNFLEVCCFGVTVLGLL 248
           PAL   C +   + LV +   L+   +F+   C+GVT+LGLL
Sbjct: 366 PALLVCCGATAVIMLVGDTYTLINYVSFINYLCYGVTILGLL 407


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,156,158
Number of Sequences: 219361
Number of extensions: 1032079
Number of successful extensions: 2291
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2291
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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