ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC121797.3| Mus musculus BAC clone RP23-424C23 from chromosom... 40 0.51
2gb|DQ481663.1| Takifugu rubripes HoxAa gene cluster, complete se... 38 2.0
3gb|AC113001.9| Mus musculus chromosome 7, clone RP23-184M4, comp... 36 8.0
4ref|XM_980230.1| PREDICTED: Mus musculus cDNA sequence BC016423,... 36 8.0
5ref|XM_980269.1| PREDICTED: Mus musculus cDNA sequence BC016423,... 36 8.0
6ref|XM_980192.1| PREDICTED: Mus musculus cDNA sequence BC016423,... 36 8.0
7ref|XM_980152.1| PREDICTED: Mus musculus cDNA sequence BC016423,... 36 8.0
8ref|XM_980311.1| PREDICTED: Mus musculus cDNA sequence BC016423,... 36 8.0
9ref|XM_918783.2| PREDICTED: Mus musculus cDNA sequence BC016423,... 36 8.0
10ref|XM_918799.2| PREDICTED: Mus musculus cDNA sequence BC016423,... 36 8.0
11ref|XM_918840.2| PREDICTED: Mus musculus cDNA sequence BC016423,... 36 8.0
12ref|XM_918832.2| PREDICTED: Mus musculus cDNA sequence BC016423,... 36 8.0
13ref|XM_972902.1| PREDICTED: Mus musculus cDNA sequence BC016423,... 36 8.0
14ref|XM_918790.2| PREDICTED: Mus musculus cDNA sequence BC016423,... 36 8.0
15ref|XM_896323.2| PREDICTED: Mus musculus cDNA sequence BC016423,... 36 8.0
16ref|XM_896349.2| PREDICTED: Mus musculus cDNA sequence BC016423,... 36 8.0
17ref|XM_622100.3| PREDICTED: Mus musculus cDNA sequence BC016423,... 36 8.0
18ref|XM_896389.2| PREDICTED: Mus musculus cDNA sequence BC016423,... 36 8.0
19ref|XM_986771.1| PREDICTED: Mus musculus cDNA sequence BC016423,... 36 8.0
20ref|XM_896334.2| PREDICTED: Mus musculus cDNA sequence BC016423,... 36 8.0
21gb|AC126441.5| Mus musculus BAC clone RP23-431D8 from chromosome... 36 8.0
22gb|AC124457.4| Mus musculus BAC clone RP24-134O20 from chromosom... 36 8.0
23gb|AC101723.9| Mus musculus chromosome 17, clone RP23-316J7, com... 36 8.0
24gb|AC158910.3| Mus musculus chromosome 1, clone RP23-181P16, com... 36 8.0
25emb|AJ307670.1|MMU307670 Mus musculus St5 gene, L27a gene and Ki... 36 8.0
26gb|AC155276.3| Mus musculus BAC clone RP23-26E18 from chromosome... 36 8.0
27dbj|AK220437.1| Mus musculus mRNA for mKIAA2006 protein 36 8.0
28dbj|AK138119.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 36 8.0
29gb|BC075685.1| Mus musculus cDNA sequence BC016423, mRNA (cDNA c... 36 8.0
30gb|AC013492.5|AC013492 Homo sapiens chromosome , clone RP11-32K4... 36 8.0
31gb|AC155816.3| Mus musculus BAC clone RP23-435J8 from chromosome... 36 8.0
32gb|AF137396.2|AF137396 Homo sapiens ubiquilin 3, HOR 5'Beta14, H... 36 8.0
33gb|AC007041.3| Homo sapiens BAC clone RP11-327N17 from 2, comple... 36 8.0
34gb|AC104389.8| Homo sapiens chromosome 11, clone CTD-2643I7, com... 36 8.0
35gb|BC085160.1| Mus musculus cDNA sequence BC016423, mRNA (cDNA c... 36 8.0
36gb|AC159739.3| Mus musculus BAC clone RP23-442O9 from chromosome... 36 8.0
37emb|CT486001.10| Mouse DNA sequence from clone RP23-343G13 on ch... 36 8.0
38gb|AC005856.1|AC005856 Homo sapiens chromosome 17, clone hRPK.13... 36 8.0
39gb|AC174927.2| Mus musculus BAC clone RP24-325L16 from chromosom... 36 8.0
40gb|AC129597.5| Mus musculus BAC clone RP23-262I17 from 13, compl... 36 8.0 
>gb|AC121797.3| Mus musculus BAC clone RP23-424C23 from chromosome 3, complete sequence
          Length = 177109

 Score = 40.1 bits (20), Expect = 0.51
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    tgggtacagttctttattgg 34
             ||||||||||||||||||||
Sbjct: 61035 tgggtacagttctttattgg 61016
to top
>gb|DQ481663.1| Takifugu rubripes HoxAa gene cluster, complete sequence
          Length = 385816

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     ttattggcaaagggatgta 46
              |||||||||||||||||||
Sbjct: 328512 ttattggcaaagggatgta 328494
to top
>gb|AC113001.9| Mus musculus chromosome 7, clone RP23-184M4, complete sequence
          Length = 206940

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 15    tgggtacagttctttatt 32
             ||||||||||||||||||
Sbjct: 72670 tgggtacagttctttatt 72653
to top
>ref|XM_980230.1| PREDICTED: Mus musculus cDNA sequence BC016423, transcript variant
           4 (BC016423), mRNA
          Length = 8632

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 8   tcagtactgggtacagttcttt 29
           ||||| ||||||||||||||||
Sbjct: 942 tcagttctgggtacagttcttt 921
to top
>ref|XM_980269.1| PREDICTED: Mus musculus cDNA sequence BC016423, transcript variant 5
            (BC016423), mRNA
          Length = 9329

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    tcagtactgggtacagttcttt 29
            ||||| ||||||||||||||||
Sbjct: 1389 tcagttctgggtacagttcttt 1368
to top
>ref|XM_980192.1| PREDICTED: Mus musculus cDNA sequence BC016423, transcript variant 3
            (BC016423), mRNA
          Length = 8860

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    tcagtactgggtacagttcttt 29
            ||||| ||||||||||||||||
Sbjct: 1500 tcagttctgggtacagttcttt 1479
to top
>ref|XM_980152.1| PREDICTED: Mus musculus cDNA sequence BC016423, transcript variant 2
            (BC016423), mRNA
          Length = 8616

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    tcagtactgggtacagttcttt 29
            ||||| ||||||||||||||||
Sbjct: 1256 tcagttctgggtacagttcttt 1235
to top
>ref|XM_980311.1| PREDICTED: Mus musculus cDNA sequence BC016423, transcript variant 6
            (BC016423), mRNA
          Length = 9380

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    tcagtactgggtacagttcttt 29
            ||||| ||||||||||||||||
Sbjct: 1690 tcagttctgggtacagttcttt 1669
to top
>ref|XM_918783.2| PREDICTED: Mus musculus cDNA sequence BC016423, transcript variant
           12 (BC016423), mRNA
          Length = 8632

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 8   tcagtactgggtacagttcttt 29
           ||||| ||||||||||||||||
Sbjct: 942 tcagttctgggtacagttcttt 921
to top
>ref|XM_918799.2| PREDICTED: Mus musculus cDNA sequence BC016423, transcript variant 14
            (BC016423), mRNA
          Length = 9184

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    tcagtactgggtacagttcttt 29
            ||||| ||||||||||||||||
Sbjct: 1494 tcagttctgggtacagttcttt 1473
to top
>ref|XM_918840.2| PREDICTED: Mus musculus cDNA sequence BC016423, transcript variant 19
            (BC016423), mRNA
          Length = 9630

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    tcagtactgggtacagttcttt 29
            ||||| ||||||||||||||||
Sbjct: 1690 tcagttctgggtacagttcttt 1669
to top
>ref|XM_918832.2| PREDICTED: Mus musculus cDNA sequence BC016423, transcript variant 18
            (BC016423), mRNA
          Length = 9050

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    tcagtactgggtacagttcttt 29
            ||||| ||||||||||||||||
Sbjct: 1690 tcagttctgggtacagttcttt 1669
to top
>ref|XM_972902.1| PREDICTED: Mus musculus cDNA sequence BC016423, transcript variant 20
            (BC016423), mRNA
          Length = 9380

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    tcagtactgggtacagttcttt 29
            ||||| ||||||||||||||||
Sbjct: 1690 tcagttctgggtacagttcttt 1669
to top
>ref|XM_918790.2| PREDICTED: Mus musculus cDNA sequence BC016423, transcript variant 13
            (BC016423), mRNA
          Length = 9509

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    tcagtactgggtacagttcttt 29
            ||||| ||||||||||||||||
Sbjct: 1819 tcagttctgggtacagttcttt 1798
to top
>ref|XM_896323.2| PREDICTED: Mus musculus cDNA sequence BC016423, transcript variant
           4 (BC016423), mRNA
          Length = 8632

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 8   tcagtactgggtacagttcttt 29
           ||||| ||||||||||||||||
Sbjct: 942 tcagttctgggtacagttcttt 921
to top
>ref|XM_896349.2| PREDICTED: Mus musculus cDNA sequence BC016423, transcript variant 6
            (BC016423), mRNA
          Length = 9184

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    tcagtactgggtacagttcttt 29
            ||||| ||||||||||||||||
Sbjct: 1494 tcagttctgggtacagttcttt 1473
to top
>ref|XM_622100.3| PREDICTED: Mus musculus cDNA sequence BC016423, transcript variant 1
            (BC016423), mRNA
          Length = 9630

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    tcagtactgggtacagttcttt 29
            ||||| ||||||||||||||||
Sbjct: 1690 tcagttctgggtacagttcttt 1669
to top
>ref|XM_896389.2| PREDICTED: Mus musculus cDNA sequence BC016423, transcript variant 9
            (BC016423), mRNA
          Length = 9050

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    tcagtactgggtacagttcttt 29
            ||||| ||||||||||||||||
Sbjct: 1690 tcagttctgggtacagttcttt 1669
to top
>ref|XM_986771.1| PREDICTED: Mus musculus cDNA sequence BC016423, transcript variant 10
            (BC016423), mRNA
          Length = 9380

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    tcagtactgggtacagttcttt 29
            ||||| ||||||||||||||||
Sbjct: 1690 tcagttctgggtacagttcttt 1669
to top
>ref|XM_896334.2| PREDICTED: Mus musculus cDNA sequence BC016423, transcript variant 5
            (BC016423), mRNA
          Length = 9509

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    tcagtactgggtacagttcttt 29
            ||||| ||||||||||||||||
Sbjct: 1819 tcagttctgggtacagttcttt 1798
to top
>gb|AC126441.5| Mus musculus BAC clone RP23-431D8 from chromosome 7, complete sequence
          Length = 220308

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     ggaaacatcagtactggg 18
             ||||||||||||||||||
Sbjct: 21844 ggaaacatcagtactggg 21827
to top
>gb|AC124457.4| Mus musculus BAC clone RP24-134O20 from chromosome 7, complete sequence
          Length = 166862

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     ggaaacatcagtactggg 18
             ||||||||||||||||||
Sbjct: 92352 ggaaacatcagtactggg 92335
to top
>gb|AC101723.9| Mus musculus chromosome 17, clone RP23-316J7, complete sequence
          Length = 181452

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 30     attggcaaagggatgtac 47
              ||||||||||||||||||
Sbjct: 165064 attggcaaagggatgtac 165081
to top
>gb|AC158910.3| Mus musculus chromosome 1, clone RP23-181P16, complete sequence
          Length = 195115

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 4      aacatcagtactgggtac 21
              ||||||||||||||||||
Sbjct: 112844 aacatcagtactgggtac 112861
to top
>emb|AJ307670.1|MMU307670 Mus musculus St5 gene, L27a gene and Kiaa0298 gene
          Length = 202748

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 1      ggaaacatcagtactggg 18
              ||||||||||||||||||
Sbjct: 163532 ggaaacatcagtactggg 163549
to top
>gb|AC155276.3| Mus musculus BAC clone RP23-26E18 from chromosome 8, complete sequence
          Length = 234359

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 29    tattggcaaagggatgta 46
             ||||||||||||||||||
Sbjct: 88196 tattggcaaagggatgta 88213
to top
>dbj|AK220437.1| Mus musculus mRNA for mKIAA2006 protein
          Length = 8323

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    tcagtactgggtacagttcttt 29
            ||||| ||||||||||||||||
Sbjct: 1678 tcagttctgggtacagttcttt 1657
to top
>dbj|AK138119.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130099B10 product:hypothetical protein,
            full insert sequence
          Length = 1799

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    tcagtactgggtacagttcttt 29
            ||||| ||||||||||||||||
Sbjct: 1691 tcagttctgggtacagttcttt 1670
to top
>gb|BC075685.1| Mus musculus cDNA sequence BC016423, mRNA (cDNA clone
            IMAGE:30610646), partial cds
          Length = 2860

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    tcagtactgggtacagttcttt 29
            ||||| ||||||||||||||||
Sbjct: 1166 tcagttctgggtacagttcttt 1145
to top
>gb|AC013492.5|AC013492 Homo sapiens chromosome , clone RP11-32K4, complete sequence
          Length = 167174

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 14     ctgggtacagttctttat 31
              ||||||||||||||||||
Sbjct: 119789 ctgggtacagttctttat 119806
to top
>gb|AC155816.3| Mus musculus BAC clone RP23-435J8 from chromosome 8, complete sequence
          Length = 207128

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 29     tattggcaaagggatgta 46
              ||||||||||||||||||
Sbjct: 193476 tattggcaaagggatgta 193493
to top
>gb|AF137396.2|AF137396 Homo sapiens ubiquilin 3, HOR 5'Beta14, HOR5'Beta13, HOR5'Beta12, and
              HOR5'Beta11 genes, complete cds; HOR 5'Beta10 and
              HOR5'Beta9 pseudogenes, complete sequence; HOR5'Beta8 and
              HOR5'Beta7 genes, complete cds; CHR11ORF1 and amphiphysin
              pseudogenes, complete sequence; HOR5'Beta6 and HOR5'Beta5
              genes, complete cds; HOR5'Beta4 pseudogene, complete
              sequence; HOR 5'Beta3 genes, complete cds; HOR5'Beta2
              pseudogene, complete sequence; and HOR 5'Beta1 gene,
              complete cds
          Length = 219955

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 16     gggtacagttctttattg 33
              ||||||||||||||||||
Sbjct: 204548 gggtacagttctttattg 204565
to top
>gb|AC007041.3| Homo sapiens BAC clone RP11-327N17 from 2, complete sequence
          Length = 173397

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     agtactgggtacagttct 27
              ||||||||||||||||||
Sbjct: 123739 agtactgggtacagttct 123756
to top
>gb|AC104389.8| Homo sapiens chromosome 11, clone CTD-2643I7, complete sequence
          Length = 207343

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 16     gggtacagttctttattg 33
              ||||||||||||||||||
Sbjct: 110525 gggtacagttctttattg 110508
to top
>gb|BC085160.1| Mus musculus cDNA sequence BC016423, mRNA (cDNA clone
           IMAGE:6852955)
          Length = 7099

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 8   tcagtactgggtacagttcttt 29
           ||||| ||||||||||||||||
Sbjct: 433 tcagttctgggtacagttcttt 412
to top
>gb|AC159739.3| Mus musculus BAC clone RP23-442O9 from chromosome 9, complete sequence
          Length = 207308

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 24     ttctttattggcaaaggg 41
              ||||||||||||||||||
Sbjct: 141899 ttctttattggcaaaggg 141916
to top
>emb|CT486001.10| Mouse DNA sequence from clone RP23-343G13 on chromosome 17, complete
              sequence
          Length = 175737

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 30     attggcaaagggatgtac 47
              ||||||||||||||||||
Sbjct: 107479 attggcaaagggatgtac 107496
to top
>gb|AC005856.1|AC005856 Homo sapiens chromosome 17, clone hRPK.136_H_19, complete sequence
          Length = 126910

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     ggaaacatcagtactggg 18
             ||||||||||||||||||
Sbjct: 63461 ggaaacatcagtactggg 63444
to top
>gb|AC174927.2| Mus musculus BAC clone RP24-325L16 from chromosome 9, complete sequence
          Length = 195951

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 24    ttctttattggcaaaggg 41
             ||||||||||||||||||
Sbjct: 16348 ttctttattggcaaaggg 16365
to top
>gb|AC129597.5| Mus musculus BAC clone RP23-262I17 from 13, complete sequence
          Length = 195537

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 8      tcagtactgggtacagttcttt 29
              ||||| ||||||||||||||||
Sbjct: 127224 tcagttctgggtacagttcttt 127203


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 363,006
Number of Sequences: 3902068
Number of extensions: 363006
Number of successful extensions: 83056
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82994
Number of HSP's gapped (non-prelim): 62
length of query: 56
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 36
effective length of database: 17,155,003,908
effective search space: 617580140688
effective search space used: 617580140688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
to top