ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y13L_BPT4 (P39505) Hypothetical 9.4 kDa protein in nrdB-nrdA int... 33 0.27
2AT12A_RABIT (Q9TV52) Potassium-transporting ATPase alpha chain 2... 30 2.3
3O10Z1_HUMAN (Q8NGY1) Olfactory receptor 10Z1 28 6.7
4COL_PIG (P02703) Colipase precursor (Procolipase II) 28 6.7
5TLC2_CHLPN (Q9Z7U0) ADP,ATP carrier protein 2 (ADP/ATP transloca... 28 8.8
6CXA1_BRARE (O57474) Gap junction alpha-1 protein (Connexin-43) (... 28 8.8

>Y13L_BPT4 (P39505) Hypothetical 9.4 kDa protein in nrdB-nrdA intergenic|
           region
          Length = 83

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +1

Query: 172 LHPKYHTFTRIKNKRSIQNTTNLLSMRQQIVHYLPICRHQKKKPNRNNKINYSYKESR 345
           L+P Y T +  ++    + T +L+S+R +     P C H  KK N+ N + + Y + +
Sbjct: 21  LNPMYGTISPTRDVPHTKETRDLISLRTKQGAEYPPCPHCGKKVNKGNALRWHYDKCK 78



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>AT12A_RABIT (Q9TV52) Potassium-transporting ATPase alpha chain 2 (EC 3.6.3.10)|
           (Proton pump) (Non-gastric H(+)/K(+) ATPase alpha
           subunit) (HK alpha 2)
          Length = 1094

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +3

Query: 27  WLTFGIKFVAKVGTSVVTIYMRYVAATI*ITCGC----NNLNNKTHESDFVKITPKISHI 194
           W+ FGI++V+    S+  +Y+  V A + I  G         +    + F K+ P+ + +
Sbjct: 182 WIAFGIQYVSNPSASLDRVYLGTVLAVVVILTGIFAYYQEAKSTNIMASFCKMIPQQAVV 241

Query: 195 YKDQE 209
            +D E
Sbjct: 242 IRDSE 246



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>O10Z1_HUMAN (Q8NGY1) Olfactory receptor 10Z1|
          Length = 313

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -2

Query: 212 LFLILVNV*YFGCNFNKIRLVCFVIQIVAAT----CYSNCCSHITHVNCHNRCANF 57
           L L+++ V +F    +   ++  +++I +A      +S C SH+T V  H  CA+F
Sbjct: 202 LSLLVLLVSFFFITISYAYILAAILRIPSAEGQKKAFSTCASHLTVVIIHYGCASF 257



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>COL_PIG (P02703) Colipase precursor (Procolipase II)|
          Length = 112

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 128 AATCYSNCCSHITHVNCHNRCANFGNEFNTEC 33
           +A C SNCC H T ++  +RCA    E N+EC
Sbjct: 37  SAQCKSNCCQHDTILSL-SRCALKARE-NSEC 66



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>TLC2_CHLPN (Q9Z7U0) ADP,ATP carrier protein 2 (ADP/ATP translocase 2)|
          Length = 540

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 35  IRY*IRCQSWHICCDNLHALCGCNNLNNMWL 127
           + Y   C SWH    NL  L  C+ L  +WL
Sbjct: 212 VAYSFACDSWHSVMLNLTMLITCSGLIMIWL 242



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>CXA1_BRARE (O57474) Gap junction alpha-1 protein (Connexin-43) (Cx43) (Short|
           fin protein)
          Length = 380

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 280 CRHQKKKPNRNNKINYSYKESR-GRYGETSATSYS 381
           CR+  K+ N  N  NYS +++R G+ G T + S++
Sbjct: 296 CRNYNKQANEQNWANYSTEQNRLGQNGSTISNSHA 330


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,477,694
Number of Sequences: 219361
Number of extensions: 929993
Number of successful extensions: 2308
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2308
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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