>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2|
           COP)
          Length = 871

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 26/64 (40%), Positives = 39/64 (60%)
 Frame = -3

Query: 420 VSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGISGPKEVAMKLAV 241
           V+ +I+ LGMQPCE +D V  N  SH+  L+G+F G   +LVR    ++    V M++ V
Sbjct: 798 VNNIITFLGMQPCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRLALA--DGVTMQVTV 855

Query: 240 RSDD 229
           RS +
Sbjct: 856 RSKE 859

>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)|
            (Gamma-COP)
          Length = 870

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = -3

Query: 420  VSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGIS-GPKEVAMKLA 244
            V  +  ILG+ PCE +D V      HT  LSGVF G   VL + +  +      +AM + 
Sbjct: 794  VKKISEILGLVPCERSDRVPEGKTQHTVFLSGVFRGGYDVLSKATVAVDPNDNSIAMNII 853

Query: 243  VRSDDPEVSDRI 208
            ++S++P V+D +
Sbjct: 854  IKSNEPLVADLV 865

>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2|
           COP)
          Length = 871

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 26/64 (40%), Positives = 39/64 (60%)
 Frame = -3

Query: 420 VSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGISGPKEVAMKLAV 241
           V+ +I+ LGMQPCE +D V  N  SH+  L+GV+ G   +LVR    ++    V M++ V
Sbjct: 798 VNNIITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALA--DGVTMQVTV 855

Query: 240 RSDD 229
           RS +
Sbjct: 856 RSKE 859

>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)|
          Length = 874

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 21/43 (48%), Positives = 28/43 (65%)
 Frame = -3

Query: 420 VSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVR 292
           V  ++  LGM PCE +D V +N  +HT LL+GVF G   +LVR
Sbjct: 801 VGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843

>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)|
          Length = 874

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 21/43 (48%), Positives = 28/43 (65%)
 Frame = -3

Query: 420 VSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVR 292
           V  ++  LGM PCE +D V +N  +HT LL+GVF G   +LVR
Sbjct: 801 VGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843

>YDAM_ECOLI (P77302) Hypothetical protein ydaM|
          Length = 430

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 412 CYKHPWHAALRGNRCCPKQFEIAHLP 335
           C KH W   + G R  P   EI+HLP
Sbjct: 192 CQKHTWEINMLGRRVMPIMHEISHLP 217

>YDAM_ECO57 (Q8X8Q3) Hypothetical protein ydaM|
          Length = 430

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 412 CYKHPWHAALRGNRCCPKQFEIAHLP 335
           C KH W   + G R  P   EI+HLP
Sbjct: 192 CQKHTWEINMLGRRVMPIMHEISHLP 217

>NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 327 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 220
           G  + +V  L R+ +GI  P+EV +K+  + D+P +
Sbjct: 63  GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98

>NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 327 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 220
           G  + +V  L R+ +GI  P+EV +K+  + D+P +
Sbjct: 63  GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98

>NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 327 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 220
           G  + +V  L R+ +GI  P+EV +K+  + D+P +
Sbjct: 63  GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98

>NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 327 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 220
           G  + +V  L R+ +GI  P+EV +K+  + D+P +
Sbjct: 63  GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98

>NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 327 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 220
           G  + +V  L R+ +GI  P+EV +K+  + D+P +
Sbjct: 63  GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98

>NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 159

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 327 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 220
           G  + +V  L R+ +GI  P+EV +K+  + D+P +
Sbjct: 63  GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98

>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)|
            (Gamma-COP)
          Length = 905

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -3

Query: 417  SAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGISGPKE-VAMKLAV 241
            S V  +L MQP EGT+    +   H   LSG  +   KVL  +    S   E + +K+  
Sbjct: 831  SRVAELLQMQPLEGTE-NPTDKPVHVMKLSGKLVNGEKVLALVKMAHSKDGEGITIKVIA 889

Query: 240  RSDDPEVSDRIHEIVANG 187
            R +    SD   E+V  G
Sbjct: 890  RGE----SDSSVELVVGG 903

>SLS1_YEAST (P42900) Sigma-like sequence protein 1, mitochondrial precursor|
           (Protein SLS1)
          Length = 643

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +2

Query: 188 PFATISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPM 319
           P  +IS  LS+T G S  +ASF ++ F PLI    ++K   LPM
Sbjct: 386 PSDSISQSLSITLGHSLQSASF-SSIFQPLIHKSFISKLLNLPM 428

>NUGC_SOYBN (P31174) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 158

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 327 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 220
           G  + +V  L RL +GI  P+EV +K+ V   +P +
Sbjct: 62  GGLLASVYHLTRLEYGIDQPEEVCIKIFVARKNPRI 97

>REXO3_YARLI (Q6CFE7) RNA exonuclease 3 (EC 3.1.-.-)|
          Length = 757

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +2

Query: 188 PFATISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPMNTPESRQVCDLEL 358
           PF T+S   SL + +S  T++   TS     P+   TKT + P +TP       L+L
Sbjct: 466 PFRTVSTSESLDTSTSTSTSTSATTS----APSAKSTKTASRPASTPTKSLTSSLDL 518

>RPOB_EUGGR (P23579) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1082

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 200 ISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPMNTPESRQVCDLE 355
           +S +L  T+  S+LT     + FGP   N   TK     +NT +  +VC +E
Sbjct: 365 LSQLLDDTNSLSELTHKRKLSPFGPNGLNKERTKLDVREINTSQYGRVCPIE 416

>T2R46_PAPHA (Q646G0) Taste receptor type 2 member 46 (T2R46)|
          Length = 309

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 143 LAFHLVKAQGISINYSIWLCVSWFSRWNPTVVAASFL 33
           LAFH V+ +  S  Y++W+  + FS W  T ++  +L
Sbjct: 73  LAFHSVEVR--STAYNVWVVTNHFSNWLSTSLSMFYL 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,194,693
Number of Sequences: 219361
Number of extensions: 966911
Number of successful extensions: 2292
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2292
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)