ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YBY1_YEAST (P38273) Protein YBR131W 28 7.3
2COX1_COLPO (O99041) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ... 27 9.5
3CRN6_CAEEL (P34508) Cell death-related nuclease 6 precursor (EC ... 27 9.5

>YBY1_YEAST (P38273) Protein YBR131W|
          Length = 704

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 147 ESKLPAQWISLHFWLDYRAYEISSRFIYFLNASF 248
           +S +P Q++S + WL Y       RF   LN SF
Sbjct: 100 QSAIPLQYLSAYLWLSY-------RFFKLLNGSF 126



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>COX1_COLPO (O99041) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 514

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 131 HSRNCKWQLMYIWLTGFPFIVLV 63
           H RN KW    +W  GF F+  V
Sbjct: 328 HGRNIKWSPAMLWALGFIFLFTV 350



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>CRN6_CAEEL (P34508) Cell death-related nuclease 6 precursor (EC 3.1.-.-)|
          Length = 378

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 144 IESKLPAQWISLHFWLDYRAYEISSRFI 227
           ++S + A++I L + +DY +YE  S+F+
Sbjct: 274 VQSTMSAKYIRLPYAIDYSSYEDHSKFV 301


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,636,752
Number of Sequences: 219361
Number of extensions: 961918
Number of successful extensions: 1991
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1991
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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