ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl47d02 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 41.6 bits (96), Expect = 5e-04 Identities = 19/23 (82%), Positives = 21/23 (91%) Frame = -2 Query: 329 NTSDHTGQAEGLTARGIPNSISI 261 NTSD+ G AEG+TARGIPNSISI Sbjct: 841 NTSDNKGAAEGITARGIPNSISI 863
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 41.6 bits (96), Expect = 5e-04 Identities = 19/23 (82%), Positives = 20/23 (86%) Frame = -2 Query: 329 NTSDHTGQAEGLTARGIPNSISI 261 NTSDH G A GLTA+GIPNSISI Sbjct: 840 NTSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/23 (78%), Positives = 20/23 (86%) Frame = -2 Query: 329 NTSDHTGQAEGLTARGIPNSISI 261 NTSD TG A G+TA+GIPNSISI Sbjct: 844 NTSDVTGAAAGITAKGIPNSISI 866
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 37.4 bits (85), Expect = 0.009 Identities = 18/23 (78%), Positives = 19/23 (82%) Frame = -2 Query: 329 NTSDHTGQAEGLTARGIPNSISI 261 NTSD G A GL+ARGIPNSISI Sbjct: 848 NTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 31.6 bits (70), Expect = 0.52 Identities = 17/24 (70%), Positives = 19/24 (79%), Gaps = 1/24 (4%) Frame = -2 Query: 329 NTSDHTGQ-AEGLTARGIPNSISI 261 NTSD T + +GLTA GIPNSISI Sbjct: 854 NTSDVTKEKGQGLTAMGIPNSISI 877
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 30.8 bits (68), Expect = 0.88 Identities = 14/19 (73%), Positives = 14/19 (73%) Frame = -2 Query: 317 HTGQAEGLTARGIPNSISI 261 H EGLT RGIPNSISI Sbjct: 846 HPSSKEGLTFRGIPNSISI 864
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/15 (86%), Positives = 14/15 (93%) Frame = -2 Query: 305 AEGLTARGIPNSISI 261 +EGLT RGIPNSISI Sbjct: 851 SEGLTCRGIPNSISI 865
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/19 (68%), Positives = 14/19 (73%) Frame = -2 Query: 317 HTGQAEGLTARGIPNSISI 261 H EGLT +GIPNSISI Sbjct: 846 HRSSEEGLTFKGIPNSISI 864
>PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)| Length = 1004 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -3 Query: 325 PPTTRDRPRGSPPGASRTAYP 263 PP T RP GSPP A+R P Sbjct: 652 PPLTDSRPLGSPPNATRVLTP 672
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/18 (77%), Positives = 15/18 (83%) Frame = -2 Query: 314 TGQAEGLTARGIPNSISI 261 T + EGLT RGIPNSISI Sbjct: 845 TCEDEGLTFRGIPNSISI 862
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -2 Query: 302 EGLTARGIPNSISI 261 EGLT RGIPNSISI Sbjct: 853 EGLTCRGIPNSISI 866
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -2 Query: 302 EGLTARGIPNSISI 261 EGLT RGIPNSISI Sbjct: 840 EGLTFRGIPNSISI 853
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -2 Query: 302 EGLTARGIPNSISI 261 EGLT RGIPNSISI Sbjct: 844 EGLTFRGIPNSISI 857
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -2 Query: 302 EGLTARGIPNSISI 261 EGLT RGIPNSISI Sbjct: 848 EGLTFRGIPNSISI 861
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -2 Query: 302 EGLTARGIPNSISI 261 EGLT RGIPNSISI Sbjct: 826 EGLTFRGIPNSISI 839
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -2 Query: 188 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 51 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -2 Query: 188 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 51 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758
>CB024_HUMAN (Q9BV87) Protein C2orf24| Length = 410 Score = 27.7 bits (60), Expect = 7.5 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Frame = -2 Query: 272 SISI*SEHVRRRDLMLLCYPCLLTPELACVCVCDRELC-----RCMNN*GNKGACTTGLI 108 ++++ S V + L L C P P+L C E C +C+ + N +C G + Sbjct: 244 ALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGSM 303 Query: 107 GMRKL 93 G+R L Sbjct: 304 GLRSL 308
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = -2 Query: 302 EGLTARGIPNSISI 261 EGLT +GIPNS+SI Sbjct: 846 EGLTGKGIPNSVSI 859
>PHF12_MOUSE (Q5SPL2) PHD finger protein 12 (PHD factor 1) (Pf1)| Length = 1003 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -3 Query: 325 PPTTRDRPRGSPPGASRTAYP 263 P +T RP GSPP A+R P Sbjct: 651 PSSTESRPLGSPPNATRVLTP 671
>ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator (ARNT| protein) (Dioxin receptor, nuclear translocator) (Hypoxia-inducible factor 1 beta) (HIF-1 beta) Length = 800 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = -1 Query: 294 HRQGHPEQHIHLI*ARPSSRPHAF--VLSLL 208 HR EQH+ A+PSS+P F +LS+L Sbjct: 747 HRSSSNEQHVQPTSAQPSSQPEVFQEMLSML 777
>KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)| Length = 194 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 93 ELPHADQTRRARTLIALIIHAPAQLSV 173 ELP D TR +RTL L+ HAP + + Sbjct: 7 ELPAPDATRISRTLSYLLRHAPQTIGL 33 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,450,887 Number of Sequences: 219361 Number of extensions: 987686 Number of successful extensions: 2795 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2647 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2792 length of database: 80,573,946 effective HSP length: 85 effective length of database: 61,928,261 effective search space used: 1486278264 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
