ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl47c12 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01, complete sequence Length = 186325 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Minus Query: 48 tgatcaatctacaatgttatagtttgaacc 77 ||||||||||||||||||||| ||| |||| Sbjct: 5759 tgatcaatctacaatgttatattttaaacc 5730
>emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23, complete sequence Length = 149892 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Minus Query: 48 tgatcaatctacaatgttatagtttgaacc 77 ||||||||||||||||||||| ||| |||| Sbjct: 135789 tgatcaatctacaatgttatattttaaacc 135760
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Minus Query: 48 tgatcaatctacaatgttatagtttgaacc 77 ||||||||||||||||||||| ||| |||| Sbjct: 29332743 tgatcaatctacaatgttatattttaaacc 29332714
>emb|AL122016.15|HSJ161C16 Human DNA sequence from clone RP1-161C16 on chromosome 6q14.2-15 Contains a ribosomal protein L31 (RPL31) pseudogene, complete sequence Length = 111453 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 ggactacgcgcccgccaccat 155 ||||||||||||||||||||| Sbjct: 22450 ggactacgcgcccgccaccat 22430
>gb|AC163104.2| Mus musculus BAC clone RP23-332A4 from chromosome 6, complete sequence Length = 195179 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ggaaccattgctccagcagc 133 |||||||||||||||||||| Sbjct: 185417 ggaaccattgctccagcagc 185398
>gb|AC129226.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0024E08, complete sequence Length = 131946 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 atcaatctacaatgttatagtttg 73 ||||||||||||||||||| |||| Sbjct: 100564 atcaatctacaatgttataatttg 100587
>gb|AC127311.3| Mus musculus BAC clone RP23-301C7 from 6, complete sequence Length = 224182 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ggaaccattgctccagcagc 133 |||||||||||||||||||| Sbjct: 120734 ggaaccattgctccagcagc 120753
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 atcaatctacaatgttatagtttg 73 ||||||||||||||||||| |||| Sbjct: 26076997 atcaatctacaatgttataatttg 26077020
>dbj|AK183688.1| Mus musculus cDNA, clone:Y0G0126M14, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000055513, based on BLAT search Length = 219 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 aaccattgctccagcagctg 135 |||||||||||||||||||| Sbjct: 169 aaccattgctccagcagctg 188
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 atcaatctacaatgttatagtttg 73 ||||||||||||||||||| |||| Sbjct: 26395693 atcaatctacaatgttataatttg 26395716
>gb|AC003112.1|AC003112 Human DNA from chromosome 19 specific cosmid R30292, genomic sequence, complete sequence Length = 40668 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 ggactacgcgcccgccacca 154 |||||||||||||||||||| Sbjct: 22151 ggactacgcgcccgccacca 22170
>gb|M33198.1|HUMIL2A2 Human interleukin 2 (IL-2) gene, 3' flank Length = 569 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ggactacgcgcccgccacca 154 |||||||||||||||||||| Sbjct: 226 ggactacgcgcccgccacca 207 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,833,483 Number of Sequences: 3902068 Number of extensions: 2833483 Number of successful extensions: 64324 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64276 Number of HSP's gapped (non-prelim): 48 length of query: 296 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 274 effective length of database: 17,147,199,772 effective search space: 4698332737528 effective search space used: 4698332737528 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
