ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl47c11 |
|---|---|
| Clone Library Name | barley_pub |
>SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (SR-related protein of 86 kDa) Length = 494 Score = 31.6 bits (70), Expect = 0.51 Identities = 15/42 (35%), Positives = 26/42 (61%) Frame = +1 Query: 118 EGARTKDARQQGAKEKEKRMTPRSVSSQDDCRSSATHKKTRK 243 E R+K+A ++ KEK+ R PRS +S RS++ ++ R+ Sbjct: 329 EKDRSKEADEKRKKEKKSRTPPRSYNSSRRSRSASRERRRRR 370
>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) Length = 494 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/42 (30%), Positives = 25/42 (59%) Frame = +1 Query: 118 EGARTKDARQQGAKEKEKRMTPRSVSSQDDCRSSATHKKTRK 243 E R+K+ ++ KEK+ R PRS ++ RS++ ++ R+ Sbjct: 329 EKDRSKETDEKRKKEKKSRTPPRSYNASRRSRSTSRERRRRR 370
>RPOB_HETCA (P36440) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1116 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = +1 Query: 82 NWLSKQRVFER*EGARTKDARQQGAKEKEKRMT--PRSVSSQDDCRSSATHKKTRKDT 249 N ++ + +E A+ ++ ++ KE+E R P + S+ D + +KKT+K T Sbjct: 1055 NEINLMQTYEEGIKAKIREEEKEREKEREAREMEDPEKIVSKIDAKQKKKYKKTKKQT 1112
>ELOA1_DROME (Q9VCP0) Transcription elongation factor B polypeptide 3 (RNA| polymerase II transcription factor SIII subunit A) (Elongin A) (dEloA) Length = 643 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/87 (20%), Positives = 45/87 (51%), Gaps = 4/87 (4%) Frame = +1 Query: 1 NRTNYNNRNSTDAQHTTFPMMLSYSQLNWLS-KQRVFER*EGARTKDARQQGAKEKEKRM 177 N + + ++++ +H S+S+ S K+ R + ++ +D ++G KE ++ Sbjct: 125 NTSKHKSKHAKSTKHERSSSSRSHSKSRSDSDKKHKSSRHDKSKDRDKDREGQKEAKEHK 184 Query: 178 TPRSVS---SQDDCRSSATHKKTRKDT 249 +S S+D +SS++HK ++ ++ Sbjct: 185 EKKSNGEHKSKDSSKSSSSHKSSKSES 211
>SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (Splicing regulatory protein 508) (SRrp508) Length = 508 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/42 (30%), Positives = 25/42 (59%) Frame = +1 Query: 118 EGARTKDARQQGAKEKEKRMTPRSVSSQDDCRSSATHKKTRK 243 E R+K+ ++ K+K+ R PRS ++ RSS+ ++ R+ Sbjct: 344 EKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRR 385
>MPH23_YEAST (P47186) Alpha-glucosides permease MPH2/3 (Maltose transport| protein 2/3) Length = 602 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +1 Query: 160 EKEKRMTPRSVSSQDDCRSSATHKKTRKDTCVCLGSEEASQSI 288 +KEKR+T + S DC +++ + TC+C + SI Sbjct: 337 DKEKRLTSKE-GSYSDCFEDKINRRRTRITCLCWAGQATCGSI 378
>YT41_CAEEL (Q11069) Hypothetical protein B0416.1 in chromosome X| Length = 1203 Score = 28.1 bits (61), Expect = 5.7 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Frame = +1 Query: 40 QHTTFPMMLSYSQLNWLSKQRVFER*EGARTKDARQQGAKEKEKRMTP---RSVSSQDDC 210 Q +F +M+ ++ K+++FE G + K K+K K++ P + VSS DD Sbjct: 807 QDLSFQLMVERTE----EKKKIFELAGGKKKKSKDNTFGKQKPKQLLPPPTKGVSSDDDS 862 Query: 211 RSSATHKKT 237 + + + K+ Sbjct: 863 QHNRSTAKS 871
>OPS2_DROPS (P28679) Opsin Rh2 (Ocellar opsin)| Length = 381 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = +1 Query: 130 TKDARQQGAKEKEKRMTPRSVSSQDDCRSSATHK 231 T A ++ +++ K+M +S+ S +DC SA +K Sbjct: 247 TVAAHEKAMRDQAKKMNVKSLRSSEDCDKSAENK 280
>ACCN3_MOUSE (Q6X1Y6) Amiloride-sensitive cation channel 3 (Acid-sensing ion| channel 3) (ASIC3) (Dorsal root ASIC) (DRASIC) Length = 530 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/18 (61%), Positives = 11/18 (61%) Frame = +1 Query: 205 DCRSSATHKKTRKDTCVC 258 DC S A RKDTCVC Sbjct: 348 DCASPALDAMLRKDTCVC 365
>AFF1_HUMAN (P51825) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene| AF4) (FEL protein) Length = 1210 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/47 (25%), Positives = 23/47 (48%) Frame = +1 Query: 118 EGARTKDARQQGAKEKEKRMTPRSVSSQDDCRSSATHKKTRKDTCVC 258 E ++TK +R K++ + P VSS + K++R++ C Sbjct: 846 ESSKTKPSRPSSQSSKKEMLPPPPVSSSSQKPAKPALKRSRREADTC 892
>ACCN3_RAT (O35240) Amiloride-sensitive cation channel 3 (Acid-sensing ion| channel 3) (ASIC3) (Dorsal root ASIC) (DRASIC) Length = 533 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/18 (61%), Positives = 11/18 (61%) Frame = +1 Query: 205 DCRSSATHKKTRKDTCVC 258 DC S A RKDTCVC Sbjct: 351 DCASPALDAMLRKDTCVC 368
>SIP3_YEAST (P38717) Protein SIP3| Length = 1229 Score = 27.3 bits (59), Expect = 9.7 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%) Frame = +1 Query: 118 EGARTKDARQQGAKEKE-----KRMTPRSVSSQDDCRSSATHKKTRKDTCVCLGSEEAS 279 EG++ D+ AK++ KR+TP S +S + RS + K KDT V S E S Sbjct: 255 EGSKVLDSDISNAKKQAYRYTLKRITPSSDTSDYNIRSIHSSKLLSKDTQVPPKSPEKS 313 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,871,220 Number of Sequences: 219361 Number of extensions: 701149 Number of successful extensions: 1882 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1845 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1879 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
