ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ESTD_PIG (Q9GJT2) Esterase D (EC 3.1.1.1) 28 5.7
2ESTD_MOUSE (Q9R0P3) Esterase D (EC 3.1.1.1) (Esterase 10) (Sid 478) 28 5.7
3ESTD_HUMAN (P10768) Esterase D (EC 3.1.1.1) 28 5.7
4Y1318_METJA (Q58714) Hypothetical protein MJ1318 28 5.7
5YGFA_ECOLI (P0AC28) Hypothetical protein ygfA 28 7.4
6YGFA_ECO57 (P0AC29) Hypothetical protein ygfA 28 7.4
7THIG_CHRVO (Q7NRL4) Thiazole biosynthesis protein thiG 28 7.4
8DP2L_METTH (O27579) DNA polymerase II large subunit (EC 2.7.7.7)... 28 7.4
9ATM_ASHGO (Q751J3) Serine/threonine-protein kinase TEL1 (EC 2.7.... 27 9.7
10LYST_MOUSE (P97412) Lysosomal trafficking regulator (Beige prote... 27 9.7
11MDR3_HUMAN (P21439) Multidrug resistance protein 3 (EC 3.6.3.44)... 27 9.7

>ESTD_PIG (Q9GJT2) Esterase D (EC 3.1.1.1)|
          Length = 282

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 194 WKIGYENVPYTTKELPMLLQTSLP 265
           WK  Y    Y T+ELP L+  + P
Sbjct: 114 WKTNYRMYSYVTEELPQLINANFP 137



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>ESTD_MOUSE (Q9R0P3) Esterase D (EC 3.1.1.1) (Esterase 10) (Sid 478)|
          Length = 282

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 194 WKIGYENVPYTTKELPMLLQTSLP 265
           WK  Y    Y T+ELP L+  + P
Sbjct: 114 WKANYRMYSYVTEELPQLINANFP 137



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>ESTD_HUMAN (P10768) Esterase D (EC 3.1.1.1)|
          Length = 282

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 194 WKIGYENVPYTTKELPMLLQTSLP 265
           WK  Y    Y T+ELP L+  + P
Sbjct: 114 WKTNYRMYSYVTEELPQLINANFP 137



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>Y1318_METJA (Q58714) Hypothetical protein MJ1318|
          Length = 602

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -2

Query: 217 HIFVPNFPCTEIDGLGAELV---VDGEVFNKSLYRCVVYVILQ 98
           H+F+   P TE+D  G+  +   V GEV  K + +  VY+ ++
Sbjct: 58  HVFMDTMPLTELDMQGSARIAAKVAGEVTGKDMSKYNVYITVR 100



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>YGFA_ECOLI (P0AC28) Hypothetical protein ygfA|
          Length = 182

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 146 LSINNQLCTQPIYFSTWKIGYENVPYTTKELPMLLQTSLPRLIPLEYHP 292
           LS + +L TQP+    W+ G          LP+L   S   L+ L YHP
Sbjct: 41  LSFDGELDTQPLIEQLWRAG------KRVYLPVLHPFSAGNLLFLNYHP 83



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>YGFA_ECO57 (P0AC29) Hypothetical protein ygfA|
          Length = 182

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 146 LSINNQLCTQPIYFSTWKIGYENVPYTTKELPMLLQTSLPRLIPLEYHP 292
           LS + +L TQP+    W+ G          LP+L   S   L+ L YHP
Sbjct: 41  LSFDGELDTQPLIEQLWRAG------KRVYLPVLHPFSAGNLLFLNYHP 83



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>THIG_CHRVO (Q7NRL4) Thiazole biosynthesis protein thiG|
          Length = 264

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 211 KCAVHDQRIAYVAANKPAKIDSIRVSSPSTGVWTS 315
           K AV   R AY+A   P +  S   SSPS GV +S
Sbjct: 227 KLAVEAGRAAYLAGRMPKRFYSAVPSSPSEGVISS 261



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>DP2L_METTH (O27579) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)|
          Length = 1092

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 243 IGNSLVVYGTFSYPIFHVLK*MGWVQSWLLMERFSINRY--TDV*YMSYYNSHNN 85
           +G+ LV +G F     HVL   GW + W +    S  +Y   D   +SYY +  N
Sbjct: 398 LGDMLVAFGEFLRNN-HVLMPAGWCEEWWIQTILSSPKYPGDDPLNLSYYRTRWN 451



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>ATM_ASHGO (Q751J3) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase TEL1) (Telomere length
            regulation protein 1) (ATM homolog)
          Length = 2768

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 230  KELPMLLQTSLPRLIPLEYHP 292
            KELP LL+ SL   IPL Y P
Sbjct: 1141 KELPQLLEISLQYAIPLAYIP 1161



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>LYST_MOUSE (P97412) Lysosomal trafficking regulator (Beige protein) (CHS1|
            homolog)
          Length = 3788

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 214  IFVPNFPCTEIDGLGAELVVDGEVFNKSLYRCVVYVILQ*P 92
            IF+   PCTEI  LG   +V+ + F  S  +C+ +  L  P
Sbjct: 1357 IFLEKSPCTEILLLGIHKIVESD-FTMSPSQCLTFPFLHTP 1396



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>MDR3_HUMAN (P21439) Multidrug resistance protein 3 (EC 3.6.3.44)|
           (P-glycoprotein 3)
          Length = 1279

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 22  MYGIVT-HNYSDWL*KIFISYKVVMAI 99
           M G++T   YSDW  K+F+S   +MAI
Sbjct: 39  MIGVLTLFRYSDWQDKLFMSLGTIMAI 65


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,248,331
Number of Sequences: 219361
Number of extensions: 1074785
Number of successful extensions: 2435
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2435
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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