Clone Name | rbastl47c08 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12) | 50 | 2e-06 | 2 | LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12) | 42 | 3e-04 | 3 | LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygena... | 41 | 0.001 | 4 | LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase... | 40 | 0.001 | 5 | LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12) | 30 | 1.3 |
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>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 49.7 bits (117), Expect = 2e-06 Identities = 22/22 (100%), Positives = 22/22 (100%) Frame = -2 Query: 223 LYPNTSDHKGAAAGLTAKGIPN 158 LYPNTSDHKGAAAGLTAKGIPN Sbjct: 837 LYPNTSDHKGAAAGLTAKGIPN 858
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 42.4 bits (98), Expect = 3e-04 Identities = 19/22 (86%), Positives = 20/22 (90%) Frame = -2 Query: 223 LYPNTSDHKGAAAGLTAKGIPN 158 LYPNTSD GAAAG+TAKGIPN Sbjct: 841 LYPNTSDVTGAAAGITAKGIPN 862
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 40.8 bits (94), Expect = 0.001 Identities = 16/22 (72%), Positives = 21/22 (95%) Frame = -2 Query: 223 LYPNTSDHKGAAAGLTAKGIPN 158 ++PNTSD+KGAA G+TA+GIPN Sbjct: 838 MFPNTSDNKGAAEGITARGIPN 859
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/22 (81%), Positives = 20/22 (90%) Frame = -2 Query: 223 LYPNTSDHKGAAAGLTAKGIPN 158 LYPNTSD KG AAGL+A+GIPN Sbjct: 845 LYPNTSDLKGDAAGLSARGIPN 866
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 30.4 bits (67), Expect = 1.3 Identities = 16/23 (69%), Positives = 16/23 (69%), Gaps = 1/23 (4%) Frame = -2 Query: 223 LYPNTSD-HKGAAAGLTAKGIPN 158 LYPNTSD K GLTA GIPN Sbjct: 851 LYPNTSDVTKEKGQGLTAMGIPN 873 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,642,144 Number of Sequences: 219361 Number of extensions: 443528 Number of successful extensions: 1007 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 999 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1007 length of database: 80,573,946 effective HSP length: 50 effective length of database: 69,605,896 effective search space used: 1670541504 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)