ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12) 50 2e-06
2LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12) 42 3e-04
3LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygena... 41 0.001
4LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase... 40 0.001
5LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12) 30 1.3

>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = -2

Query: 223 LYPNTSDHKGAAAGLTAKGIPN 158
           LYPNTSDHKGAAAGLTAKGIPN
Sbjct: 837 LYPNTSDHKGAAAGLTAKGIPN 858



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>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)|
          Length = 866

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = -2

Query: 223 LYPNTSDHKGAAAGLTAKGIPN 158
           LYPNTSD  GAAAG+TAKGIPN
Sbjct: 841 LYPNTSDVTGAAAGITAKGIPN 862



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>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)|
          Length = 863

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 16/22 (72%), Positives = 21/22 (95%)
 Frame = -2

Query: 223 LYPNTSDHKGAAAGLTAKGIPN 158
           ++PNTSD+KGAA G+TA+GIPN
Sbjct: 838 MFPNTSDNKGAAEGITARGIPN 859



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>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)|
          Length = 870

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 18/22 (81%), Positives = 20/22 (90%)
 Frame = -2

Query: 223 LYPNTSDHKGAAAGLTAKGIPN 158
           LYPNTSD KG AAGL+A+GIPN
Sbjct: 845 LYPNTSDLKGDAAGLSARGIPN 866



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>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)|
          Length = 877

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 16/23 (69%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 223 LYPNTSD-HKGAAAGLTAKGIPN 158
           LYPNTSD  K    GLTA GIPN
Sbjct: 851 LYPNTSDVTKEKGQGLTAMGIPN 873


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,642,144
Number of Sequences: 219361
Number of extensions: 443528
Number of successful extensions: 1007
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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