ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 262 9e-67
2dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic D... 262 9e-67
3dbj|AK071349.1| Oryza sativa (japonica cultivar-group) cDNA clon... 262 9e-67
4gb|AY107883.1| Zea mays PCO131850 mRNA sequence 190 3e-45
5gb|DQ333819.1| Hynobius chinensis mitochondrion, complete genome 42 1.5
6gb|DQ333811.1| Hynobius leechii mitochondrion, complete genome 42 1.5
7gb|DQ333808.1| Hynobius amjiensis mitochondrion, complete genome 42 1.5
8gb|AC116523.7| Mus musculus chromosome 9, clone RP24-349L11, com... 42 1.5
9gb|AC146479.2| Pan troglodytes BAC clone CH251-424F5 from Y, com... 42 1.5
10dbj|BS000643.3| Pan troglodytes chromosome Y clone: PTB-307J21, ... 42 1.5
11dbj|BS000632.2| Pan troglodytes chromosome Y clone: PTB-399O20, ... 42 1.5
12gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 1.5
13gb|AC101696.14| Mus musculus chromosome 1, clone RP23-238M18, co... 42 1.5
14gb|AC009234.3| Homo sapiens BAC clone RP11-358H12 from 2, comple... 42 1.5
15gb|AC087384.13| Homo sapiens chromosome 8, clone RP11-689G24, co... 42 1.5
16gb|AY659995.1| Ambystoma calforniense mitochondrion, complete ge... 42 1.5
17gb|AC154277.1| Mus musculus BAC clone RP24-266G7 from 9, complet... 42 1.5
18ref|NM_104869.2| Arabidopsis thaliana unknown protein AT1G61870 ... 40 6.1
19gb|AC163998.2| Mus musculus chromosome 15, clone RP24-326H11, co... 40 6.1
20gb|AY728219.1| Rhyacotriton variegatus mitochondrion, complete g... 40 6.1
21gb|AC068662.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 6.1
22gb|AC166057.2| Mus musculus BAC clone RP23-385D11 from chromosom... 40 6.1
23emb|AL451103.7| Human DNA sequence from clone RP11-172M3 on chro... 40 6.1
24gb|BT009692.1| Arabidopsis thaliana At1g61870 gene, complete cds 40 6.1
25gb|AC095532.8| Rattus norvegicus 18 BAC CH230-8E4 (Children's Ho... 40 6.1
26emb|CR857681.1| Pongo pygmaeus mRNA; cDNA DKFZp469C205 (from clo... 40 6.1
27emb|AL731728.10| Mouse DNA sequence from clone RP24-531N10 on ch... 40 6.1
28emb|AL731849.5| Mouse DNA sequence from clone RP23-208A2 on chro... 40 6.1
29gb|AC087113.11| Mus Musculus Strain C57BL6/J Chromosome 15 BAC, ... 40 6.1
30gb|AY062858.1| Arabidopsis thaliana Unknown protein (At1g61870; ... 40 6.1
31gb|AF428391.1|AF428391 Arabidopsis thaliana At1g61870/F8K4_8 mRN... 40 6.1
32gb|AC147961.3| Medicago truncatula chromosome 7 BAC clone mth2-3... 40 6.1
33emb|BX815172.1|CNS0ACS4 Arabidopsis thaliana Full-length cDNA Co... 40 6.1
34gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete ... 40 6.1
35gb|AC098583.2| Homo sapiens BAC clone RP11-10G12 from 4, complet... 40 6.1
36gb|AC068706.6| Homo sapiens BAC clone RP11-703O4 from 2, complet... 40 6.1
37gb|AC007680.2| Homo sapiens BAC clone RP11-354L14 from 2, comple... 40 6.1
38gb|AC154619.2| Mus musculus BAC clone RP23-322I21 from 16, compl... 40 6.1
39gb|AC154663.2| Mus musculus BAC clone RP24-283H12 from 16, compl... 40 6.1
40emb|BX901966.21| Zebrafish DNA sequence from clone DKEY-119B16 i... 40 6.1
41emb|CR388184.33| Zebrafish DNA sequence from clone CH211-261O3 i... 40 6.1
42emb|CT573097.3| RP43-080H03, complete sequence 40 6.1
43dbj|AP002851.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 6.1
44gb|AC004392.1|F8K4 Arabidopsis thaliana chromosome 1 BAC F8K4 se... 40 6.1
45gb|AC101932.9| Mus musculus chromosome 7, clone RP24-66E13, comp... 40 6.1 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  262 bits (132), Expect = 9e-67
 Identities = 204/228 (89%)
 Strand = Plus / Plus

                                                                           
Query: 217     aatgaactaacactatgatctgacgtccttgaaaacaccacctctctccatctccgcaac 276
               |||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 5993714 aatgaactaaaactatgatctgacatccttgaaaacaccacctttctccatctccgcaac 5993773

                                                                           
Query: 277     aatctctttcaaggcaggtactttgctagctaacgttctgtacagtctagaatacctggc 336
                || ||||||||||| ||||||||| ||||||  |||||||||||||||||||| |||||
Sbjct: 5993774 gatgtctttcaaggctggtactttgttagctagagttctgtacagtctagaatatctggc 5993833

                                                                           
Query: 337     tcttgtgccatcggcggatcgtgcaagggcaagcaagctcactgcttcgggcaattgctc 396
               |||||| |||||||||| |||||| |||||||||||||| | |||||| || |||| |||
Sbjct: 5993834 tcttgtaccatcggcggttcgtgccagggcaagcaagctgattgcttctggtaattcctc 5993893

                                                               
Query: 397     aaacacgcctttcatttcctcaaagcccatctctgcaagaacagatgg 444
               ||| || ||||| ||||||||||||| ||| ||||||||||| |||||
Sbjct: 5993894 aaagacaccttttatttcctcaaagctcatttctgcaagaactgatgg 5993941



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                       
Query: 122     aatgctacaacataggcttgctcatggtgtaaacagaaaa 161
               |||| ||||||||||||||| |||| || |||||| ||||
Sbjct: 5993604 aatgttacaacataggcttgttcattgtataaacaaaaaa 5993643
to top
>dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBb0024N18
          Length = 128739

 Score =  262 bits (132), Expect = 9e-67
 Identities = 204/228 (89%)
 Strand = Plus / Plus

                                                                          
Query: 217    aatgaactaacactatgatctgacgtccttgaaaacaccacctctctccatctccgcaac 276
              |||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 115366 aatgaactaaaactatgatctgacatccttgaaaacaccacctttctccatctccgcaac 115425

                                                                          
Query: 277    aatctctttcaaggcaggtactttgctagctaacgttctgtacagtctagaatacctggc 336
               || ||||||||||| ||||||||| ||||||  |||||||||||||||||||| |||||
Sbjct: 115426 gatgtctttcaaggctggtactttgttagctagagttctgtacagtctagaatatctggc 115485

                                                                          
Query: 337    tcttgtgccatcggcggatcgtgcaagggcaagcaagctcactgcttcgggcaattgctc 396
              |||||| |||||||||| |||||| |||||||||||||| | |||||| || |||| |||
Sbjct: 115486 tcttgtaccatcggcggttcgtgccagggcaagcaagctgattgcttctggtaattcctc 115545

                                                              
Query: 397    aaacacgcctttcatttcctcaaagcccatctctgcaagaacagatgg 444
              ||| || ||||| ||||||||||||| ||| ||||||||||| |||||
Sbjct: 115546 aaagacaccttttatttcctcaaagctcatttctgcaagaactgatgg 115593



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 122    aatgctacaacataggcttgctcatggtgtaaacagaaaa 161
              |||| ||||||||||||||| |||| || |||||| ||||
Sbjct: 115256 aatgttacaacataggcttgttcattgtataaacaaaaaa 115295
to top
>dbj|AK071349.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093G22, full
           insert sequence
          Length = 966

 Score =  262 bits (132), Expect = 9e-67
 Identities = 204/228 (89%)
 Strand = Plus / Minus

                                                                       
Query: 217 aatgaactaacactatgatctgacgtccttgaaaacaccacctctctccatctccgcaac 276
           |||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 750 aatgaactaaaactatgatctgacatccttgaaaacaccacctttctccatctccgcaac 691

                                                                       
Query: 277 aatctctttcaaggcaggtactttgctagctaacgttctgtacagtctagaatacctggc 336
            || ||||||||||| ||||||||| ||||||  |||||||||||||||||||| |||||
Sbjct: 690 gatgtctttcaaggctggtactttgttagctagagttctgtacagtctagaatatctggc 631

                                                                       
Query: 337 tcttgtgccatcggcggatcgtgcaagggcaagcaagctcactgcttcgggcaattgctc 396
           |||||| |||||||||| |||||| |||||||||||||| | |||||| || |||| |||
Sbjct: 630 tcttgtaccatcggcggttcgtgccagggcaagcaagctgattgcttctggtaattcctc 571

                                                           
Query: 397 aaacacgcctttcatttcctcaaagcccatctctgcaagaacagatgg 444
           ||| || ||||| ||||||||||||| ||| ||||||||||| |||||
Sbjct: 570 aaagacaccttttatttcctcaaagctcatttctgcaagaactgatgg 523



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 122 aatgctacaacataggcttgctcatggtgtaaacagaaaa 161
           |||| ||||||||||||||| |||| || |||||| ||||
Sbjct: 860 aatgttacaacataggcttgttcattgtataaacaaaaaa 821
to top
>gb|AY107883.1| Zea mays PCO131850 mRNA sequence
          Length = 1183

 Score =  190 bits (96), Expect = 3e-45
 Identities = 180/208 (86%)
 Strand = Plus / Minus

                                                                       
Query: 245 ttgaaaacaccacctctctccatctccgcaacaatctctttcaaggcaggtactttgcta 304
           |||||||||||||||||||||||||| |||||| ||||||||||||| |  |||||||| 
Sbjct: 971 ttgaaaacaccacctctctccatctctgcaacagtctctttcaaggccgtcactttgctg 912

                                                                       
Query: 305 gctaacgttctgtacagtctagaatacctggctcttgtgccatcggcggatcgtgcaagg 364
           ||||| |||||||||| ||| ||||||||||| ||||| ||||| || | |||||| | |
Sbjct: 911 gctaaggttctgtacaatcttgaatacctggcccttgtaccatctgctgttcgtgccaag 852

                                                                       
Query: 365 gcaagcaagctcactgcttcgggcaattgctcaaacacgcctttcatttcctcaaagccc 424
           ||||||||||| ||||| || ||||||||||||||||| ||||| ||||||||||| | |
Sbjct: 851 gcaagcaagctaactgcctctggcaattgctcaaacacaccttttatttcctcaaaactc 792

                                       
Query: 425 atctctgcaagaacagatggtcttggaa 452
           |  || |||||||| | |||||||||||
Sbjct: 791 aagtccgcaagaactgttggtcttggaa 764
to top
>gb|DQ333819.1| Hynobius chinensis mitochondrion, complete genome
          Length = 16408

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 207  ataactacaaaatgaactaacacta 231
            ||||||||||||| |||||||||||
Sbjct: 7194 ataactacaaaattaactaacacta 7218
to top
>gb|DQ333811.1| Hynobius leechii mitochondrion, complete genome
          Length = 16428

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 207  ataactacaaaatgaactaacacta 231
            ||||||||||||| |||||||||||
Sbjct: 7186 ataactacaaaattaactaacacta 7210
to top
>gb|DQ333808.1| Hynobius amjiensis mitochondrion, complete genome
          Length = 16401

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 207  ataactacaaaatgaactaacacta 231
            ||||||||||||| |||||||||||
Sbjct: 7177 ataactacaaaattaactaacacta 7201
to top
>gb|AC116523.7| Mus musculus chromosome 9, clone RP24-349L11, complete sequence
          Length = 184012

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 412    ttcctcaaagcccatctctgc 432
              |||||||||||||||||||||
Sbjct: 152631 ttcctcaaagcccatctctgc 152651
to top
>gb|AC146479.2| Pan troglodytes BAC clone CH251-424F5 from Y, complete sequence
          Length = 163250

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 191   atatacaacattacatataac 211
             |||||||||||||||||||||
Sbjct: 97220 atatacaacattacatataac 97240
to top
>dbj|BS000643.3| Pan troglodytes chromosome Y clone: PTB-307J21, complete sequence
          Length = 147286

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 191    atatacaacattacatataac 211
              |||||||||||||||||||||
Sbjct: 122786 atatacaacattacatataac 122806
to top
>dbj|BS000632.2| Pan troglodytes chromosome Y clone: PTB-399O20, complete sequence
          Length = 199770

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 191   atatacaacattacatataac 211
             |||||||||||||||||||||
Sbjct: 22422 atatacaacattacatataac 22442
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 191      atatacaacattacatataac 211
                |||||||||||||||||||||
Sbjct: 17699997 atatacaacattacatataac 17699977
to top
>gb|AC101696.14| Mus musculus chromosome 1, clone RP23-238M18, complete sequence
          Length = 162270

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 202    tacatataactacaaaatgaa 222
              |||||||||||||||||||||
Sbjct: 117787 tacatataactacaaaatgaa 117807
to top
>gb|AC009234.3| Homo sapiens BAC clone RP11-358H12 from 2, complete sequence
          Length = 157289

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 198    acattacatataactacaaaa 218
              |||||||||||||||||||||
Sbjct: 137730 acattacatataactacaaaa 137750
to top
>gb|AC087384.13| Homo sapiens chromosome 8, clone RP11-689G24, complete sequence
          Length = 110281

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   ccacctctctccatctccgca 274
             |||||||||||||||||||||
Sbjct: 36153 ccacctctctccatctccgca 36133
to top
>gb|AY659995.1| Ambystoma calforniense mitochondrion, complete genome
          Length = 16374

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 207  ataactacaaaatgaactaacacta 231
            ||||||||||||| |||||||||||
Sbjct: 7137 ataactacaaaattaactaacacta 7161
to top
>gb|AC154277.1| Mus musculus BAC clone RP24-266G7 from 9, complete sequence
          Length = 168300

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 412   ttcctcaaagcccatctctgc 432
             |||||||||||||||||||||
Sbjct: 74962 ttcctcaaagcccatctctgc 74982
to top
>ref|NM_104869.2| Arabidopsis thaliana unknown protein AT1G61870 mRNA, complete cds
          Length = 1612

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 260 ctctccatctccgcaacaat 279
           ||||||||||||||||||||
Sbjct: 707 ctctccatctccgcaacaat 688
to top
>gb|AC163998.2| Mus musculus chromosome 15, clone RP24-326H11, complete sequence
          Length = 153996

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    acatataactacaaaatgaa 222
              ||||||||||||||||||||
Sbjct: 144525 acatataactacaaaatgaa 144506
to top
>gb|AY728219.1| Rhyacotriton variegatus mitochondrion, complete genome
          Length = 21606

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    caacaaccatgtattttgaa 61
             ||||||||||||||||||||
Sbjct: 19841 caacaaccatgtattttgaa 19860



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    caacaaccatgtattttgaa 61
             ||||||||||||||||||||
Sbjct: 18963 caacaaccatgtattttgaa 18982



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    caacaaccatgtattttgaa 61
             ||||||||||||||||||||
Sbjct: 18078 caacaaccatgtattttgaa 18097



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    caacaaccatgtattttgaa 61
             ||||||||||||||||||||
Sbjct: 16324 caacaaccatgtattttgaa 16343



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    caacaaccatgtattttgaa 61
             ||||||||||||||||||||
Sbjct: 15443 caacaaccatgtattttgaa 15462
to top
>gb|AC068662.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-251N15, complete
             sequence
          Length = 141783

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   gcaagcaagctcactgcttc 384
             ||||||||||||||||||||
Sbjct: 39682 gcaagcaagctcactgcttc 39663
to top
>gb|AC166057.2| Mus musculus BAC clone RP23-385D11 from chromosome 14, complete
             sequence
          Length = 198165

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   tataactacaaaatgaacta 225
             ||||||||||||||||||||
Sbjct: 86983 tataactacaaaatgaacta 87002
to top
>emb|AL451103.7| Human DNA sequence from clone RP11-172M3 on chromosome Xp21.1-21.2
            Contains a CpG island, complete sequence
          Length = 175384

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  ttacatataactacaaaatg 220
            ||||||||||||||||||||
Sbjct: 5839 ttacatataactacaaaatg 5820
to top
>gb|BT009692.1| Arabidopsis thaliana At1g61870 gene, complete cds
          Length = 1227

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 260 ctctccatctccgcaacaat 279
           ||||||||||||||||||||
Sbjct: 644 ctctccatctccgcaacaat 625
to top
>gb|AC095532.8| Rattus norvegicus 18 BAC CH230-8E4 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 227576

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     ttaatattacaagggcatcc 33
              ||||||||||||||||||||
Sbjct: 171871 ttaatattacaagggcatcc 171852
to top
>emb|CR857681.1| Pongo pygmaeus mRNA; cDNA DKFZp469C205 (from clone DKFZp469C205)
          Length = 4185

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 199  cattacatataactacaaaa 218
            ||||||||||||||||||||
Sbjct: 2660 cattacatataactacaaaa 2679
to top
>emb|AL731728.10| Mouse DNA sequence from clone RP24-531N10 on chromosome 11 Contains
            part of the Car10 gene for carbonic anhydrase 10,
            complete sequence
          Length = 146735

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 412  ttcctcaaagcccatctctg 431
            ||||||||||||||||||||
Sbjct: 1674 ttcctcaaagcccatctctg 1693
to top
>emb|AL731849.5| Mouse DNA sequence from clone RP23-208A2 on chromosome 11 Contains part
              of the Car10 gene for carbonic anhydrase 10, complete
              sequence
          Length = 114636

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 412    ttcctcaaagcccatctctg 431
              ||||||||||||||||||||
Sbjct: 114310 ttcctcaaagcccatctctg 114329
to top
>gb|AC087113.11| Mus Musculus Strain C57BL6/J Chromosome 15 BAC, RP23-99A15, Complete
              Sequence, complete sequence
          Length = 223882

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 203    acatataactacaaaatgaa 222
              ||||||||||||||||||||
Sbjct: 143208 acatataactacaaaatgaa 143227
to top
>gb|AY062858.1| Arabidopsis thaliana Unknown protein (At1g61870; F8K4.8) mRNA,
           complete cds
          Length = 1532

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 260 ctctccatctccgcaacaat 279
           ||||||||||||||||||||
Sbjct: 704 ctctccatctccgcaacaat 685
to top
>gb|AF428391.1|AF428391 Arabidopsis thaliana At1g61870/F8K4_8 mRNA, complete cds
          Length = 1613

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 260 ctctccatctccgcaacaat 279
           ||||||||||||||||||||
Sbjct: 707 ctctccatctccgcaacaat 688
to top
>gb|AC147961.3| Medicago truncatula chromosome 7 BAC clone mth2-39i23, complete
             sequence
          Length = 131165

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     aggcaaatttaatattacaa 25
             ||||||||||||||||||||
Sbjct: 50877 aggcaaatttaatattacaa 50896
to top
>emb|BX815172.1|CNS0ACS4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS3ZB10 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1561

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 260 ctctccatctccgcaacaat 279
           ||||||||||||||||||||
Sbjct: 696 ctctccatctccgcaacaat 677
to top
>gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete sequence
          Length = 163823

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    aacaaccatgtattttgaat 62
             ||||||||||||||||||||
Sbjct: 72339 aacaaccatgtattttgaat 72320
to top
>gb|AC098583.2| Homo sapiens BAC clone RP11-10G12 from 4, complete sequence
          Length = 127148

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   aatgcatccatatacaacat 201
             ||||||||||||||||||||
Sbjct: 86481 aatgcatccatatacaacat 86462
to top
>gb|AC068706.6| Homo sapiens BAC clone RP11-703O4 from 2, complete sequence
          Length = 124146

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 149  tgtaaacagaaaaggttaca 168
            ||||||||||||||||||||
Sbjct: 6454 tgtaaacagaaaaggttaca 6435
to top
>gb|AC007680.2| Homo sapiens BAC clone RP11-354L14 from 2, complete sequence
          Length = 146333

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 196  caacattacatataactacaaaat 219
            ||||||||||||||||| ||||||
Sbjct: 7234 caacattacatataactgcaaaat 7211
to top
>gb|AC154619.2| Mus musculus BAC clone RP23-322I21 from 16, complete sequence
          Length = 191616

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 246    tgaaaacaccacctctctccatct 269
              |||||||| |||||||||||||||
Sbjct: 155217 tgaaaacatcacctctctccatct 155240
to top
>gb|AC154663.2| Mus musculus BAC clone RP24-283H12 from 16, complete sequence
          Length = 177341

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 246    tgaaaacaccacctctctccatct 269
              |||||||| |||||||||||||||
Sbjct: 172121 tgaaaacatcacctctctccatct 172098
to top
>emb|BX901966.21| Zebrafish DNA sequence from clone DKEY-119B16 in linkage group 14,
              complete sequence
          Length = 145325

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     catgaactacaacaaccatg 52
              ||||||||||||||||||||
Sbjct: 119743 catgaactacaacaaccatg 119762
to top
>emb|CR388184.33| Zebrafish DNA sequence from clone CH211-261O3 in linkage group 8,
             complete sequence
          Length = 180216

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 39    ctacaacaaccatgtattttgaat 62
             |||||||||||||| |||||||||
Sbjct: 27928 ctacaacaaccatgcattttgaat 27951
to top
>emb|CT573097.3| RP43-080H03, complete sequence
          Length = 174747

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 201  ttacatataactacaaaatg 220
            ||||||||||||||||||||
Sbjct: 1173 ttacatataactacaaaatg 1192
to top
>dbj|AP002851.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1042C11
          Length = 200610

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    cagaaaaggttacatgggac 174
              ||||||||||||||||||||
Sbjct: 139941 cagaaaaggttacatgggac 139922
to top
>gb|AC004392.1|F8K4 Arabidopsis thaliana chromosome 1 BAC F8K4 sequence, complete sequence
          Length = 115641

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   ctctccatctccgcaacaat 279
             ||||||||||||||||||||
Sbjct: 42850 ctctccatctccgcaacaat 42869
to top
>gb|AC101932.9| Mus musculus chromosome 7, clone RP24-66E13, complete sequence
          Length = 214419

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   ctctcttaacccaagacaat 124
             ||||||||||||||||||||
Sbjct: 60193 ctctcttaacccaagacaat 60212


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,502,215
Number of Sequences: 3902068
Number of extensions: 4502215
Number of successful extensions: 86566
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86409
Number of HSP's gapped (non-prelim): 157
length of query: 452
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 430
effective length of database: 17,147,199,772
effective search space: 7373295901960
effective search space used: 7373295901960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top