ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
2dbj|AP006055.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
3ref|XM_639146.1| Dictyostelium discoideum hypothetical protein (... 42 1.4
4gb|AC111143.10| Mus musculus chromosome 3, clone RP23-372C7, com... 42 1.4
5gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genom... 42 1.4
6gb|AC113475.12| Mus musculus chromosome 12, clone RP23-304B1, co... 42 1.4
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.4
8gb|AC113979.8| Mus musculus chromosome 12, clone RP23-478I20, co... 42 1.4
9emb|CR407547.14| Zebrafish DNA sequence from clone DKEY-62A12 in... 42 1.4
10gb|AF271358.1| Oryza sativa (indica cultivar-group) phospholipas... 42 1.4
11gb|L25598.1| Caenorhabditis elegans cosmid C06G4, complete sequence 42 1.4
12gb|AC140914.20| Medicago truncatula clone mth2-18h17, complete s... 42 1.4
13ref|NM_171886.2| Caenorhabditis elegans CaLPain family member (c... 42 1.4
14ref|NM_066339.3| Caenorhabditis elegans CaLPain family member (c... 42 1.4
15ref|NM_066340.3| Caenorhabditis elegans CaLPain family member (c... 42 1.4
16dbj|AK085840.1| Mus musculus 16 days neonate heart cDNA, RIKEN f... 42 1.4
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
18gb|AC116956.2| Dictyostelium discoideum chromosome 2 map 1418423... 42 1.4
19gb|AC154140.7| Mus musculus chromosome 1, clone RP23-184B11, com... 42 1.4
20dbj|AK069703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
21gb|AC125443.8| Mus musculus chromosome 1, clone RP24-493N12, com... 42 1.4
22gb|AC121256.22| Mus musculus chromosome 1, clone RP24-576N23, co... 42 1.4
23gb|AC073597.20| Homo sapiens Xp BAC RP11-793P1 (Roswell Park Can... 42 1.4
24gb|AC166248.20| Mus musculus BAC RP23-311A8 (Roswell Park Cance... 40 5.3
25ref|XM_639792.1| Dictyostelium discoideum hypothetical protein (... 40 5.3
26ref|XM_635475.1| Dictyostelium discoideum hypothetical protein (... 40 5.3
27ref|XM_631434.1| Dictyostelium discoideum hypothetical protein (... 40 5.3
28gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence 40 5.3
29gb|AC091702.3| Trypanosoma brucei chromosome 4 clone RPCI93-2L9,... 40 5.3
30gb|AC115036.10| Mus musculus chromosome 7, clone RP24-274F20, co... 40 5.3
31gb|AC115301.7| Mus musculus BAC clone RP24-83E2 from chromosome ... 40 5.3
32gb|BC051671.1| Mus musculus prolactin-like protein E, mRNA (cDNA... 40 5.3
33gb|AC166290.7| Mus musculus BAC RP23-14P17 (Roswell Park Cancer... 40 5.3
34gb|AC124600.5| Mus musculus BAC clone RP23-25H7 from chromosome ... 40 5.3
35gb|AY488172.1| Capsicum annuum Ran protein/TC4 protein mRNA, com... 40 5.3
36emb|Z48621.1|CER07B1 Caenorhabditis elegans Cosmid R07B1, comple... 40 5.3
37emb|BX539321.14| Zebrafish DNA sequence from clone CH211-223F3 i... 40 5.3
38gb|AC055872.23| Homo sapiens chromosome 17, clone RP11-636N17, c... 40 5.3
39ref|NM_008930.1| Mus musculus prolactin-like protein E (Prlpe), ... 40 5.3
40gb|AC146747.7| Medicago truncatula clone mth2-14h5, complete seq... 40 5.3
41gb|AC146552.16| Medicago truncatula clone mth2-9d1, complete seq... 40 5.3
42gb|AC155341.1| Brassica rapa subsp. pekinensis chromosome 6 clon... 40 5.3
43emb|AL445240.8| Human DNA sequence from clone RP11-242A15 on chr... 40 5.3
44ref|XM_780649.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.3
45gb|AY318757.1| Oryza sativa (indica cultivar-group) cohesin-like... 40 5.3
46emb|AL031320.6|HS20N2 Human DNA sequence from clone RP1-20N2 on ... 40 5.3
47emb|BX842656.1| Bdellovibrio bacteriovorus complete genome, stra... 40 5.3
48emb|AL590522.7| Mouse DNA sequence from clone RP23-117C5 on chro... 40 5.3
49emb|BX530077.4| Zebrafish DNA sequence from clone CH211-22D5 in ... 40 5.3
50gb|AC118002.2| Homo sapiens chromosome 11, clone RP11-258H15, co... 40 5.3
51gb|AC110056.5| Homo sapiens chromosome 11, clone CTD-2063L20, co... 40 5.3
52gb|AC104040.3| Homo sapiens chromosome 8, clone CTD-2023L15, com... 40 5.3
53dbj|AK146050.1| Mus musculus 11 days pregnant adult female place... 40 5.3
54dbj|AK141309.1| Mus musculus 7 days embryo whole body cDNA, RIKE... 40 5.3
55gb|AC013476.9| Homo sapiens BAC clone RP11-525G12 from 2, comple... 40 5.3
56gb|AC090349.7| Homo sapiens chromosome 18, clone RP11-844N22, co... 40 5.3
57ref|XM_685600.1| PREDICTED: Danio rerio similar to MxG protein (... 40 5.3
58gb|AC182738.1| Gasterosteus aculeatus clone VMRC26-26C14, comple... 40 5.3
59dbj|AK028371.1| Mus musculus 18 days pregnant adult female place... 40 5.3
60gb|AC117176.2| Dictyostelium discoideum chromosome 2 map 5018074... 40 5.3
61gb|AC087625.12| Homo sapiens chromosome 8, clone RP11-525O22, co... 40 5.3
62gb|AC140936.1| Gallus gallus chromosome UNK clone TAM31-90P6, co... 40 5.3
63gb|AC087273.5| Homo sapiens chromosome 8, clone RP11-156K13, com... 40 5.3
64gb|AC154743.2| Mus musculus BAC clone RP24-392N10 from 13, compl... 40 5.3
65emb|BX936311.12| Zebrafish DNA sequence from clone DKEY-53B10 in... 40 5.3
66emb|BX649398.4| Zebrafish DNA sequence from clone DKEY-202B22 in... 40 5.3
67dbj|AP006303.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 40 5.3
68dbj|AP003172.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.3
69emb|BX537633.1|HSM806421 Homo sapiens mRNA; cDNA DKFZp686J08208 ... 40 5.3
70gb|AC005668.1|AC005668 Homo sapiens chromosome 17, clone hRPK.24... 40 5.3
71emb|AL732610.16| Zebrafish DNA sequence from clone CH211-12N8, c... 40 5.3
72gb|AF011381.1|AF011381 Mus musculus placental PRL-like protein E... 40 5.3
73emb|CT025552.9| Mouse DNA sequence from clone RP24-270A4 on chro... 40 5.3
74gb|AF020525.1|AF020525 Mus musculus prolactin-like protein G pre... 40 5.3
75emb|AL954315.6| Mouse DNA sequence from clone RP23-105O1 on chro... 40 5.3
76emb|AL928710.6| Mouse DNA sequence from clone RP23-255P20 on chr... 40 5.3
77gb|AC144795.5| Mus musculus BAC clone RP24-374I3 from chromosome... 40 5.3
78dbj|AB020866.1| Homo sapiens genomic DNA of 8p21.3-p22 anti-onco... 40 5.3 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 210      tcctcttcctcttctcctgcca 231
                ||||||||||||||||||||||
Sbjct: 27633778 tcctcttcctcttctcctgcca 27633757
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>dbj|AP006055.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0778G11
          Length = 59211

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 210   tcctcttcctcttctcctgcca 231
             ||||||||||||||||||||||
Sbjct: 37961 tcctcttcctcttctcctgcca 37940
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>ref|XM_639146.1| Dictyostelium discoideum hypothetical protein (DDB0167594), partial
           mRNA
          Length = 1158

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 306 tcaaagttcatcatcatcatc 326
           |||||||||||||||||||||
Sbjct: 45  tcaaagttcatcatcatcatc 65
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>gb|AC111143.10| Mus musculus chromosome 3, clone RP23-372C7, complete sequence
          Length = 147125

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 208   attcctcttcctcttctcctg 228
             |||||||||||||||||||||
Sbjct: 56288 attcctcttcctcttctcctg 56308
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>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete
             sequence
          Length = 130272

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   ttcctcttcctcttctcctgc 229
             |||||||||||||||||||||
Sbjct: 51824 ttcctcttcctcttctcctgc 51844
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>gb|AC113475.12| Mus musculus chromosome 12, clone RP23-304B1, complete sequence
          Length = 177032

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 307    caaagttcatcatcatcatca 327
              |||||||||||||||||||||
Sbjct: 168308 caaagttcatcatcatcatca 168288
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 209      ttcctcttcctcttctcctgc 229
                |||||||||||||||||||||
Sbjct: 35050923 ttcctcttcctcttctcctgc 35050943
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>gb|AC113979.8| Mus musculus chromosome 12, clone RP23-478I20, complete sequence
          Length = 172842

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 307    caaagttcatcatcatcatca 327
              |||||||||||||||||||||
Sbjct: 134941 caaagttcatcatcatcatca 134961
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>emb|CR407547.14| Zebrafish DNA sequence from clone DKEY-62A12 in linkage group 9,
             complete sequence
          Length = 204067

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 30    attatgggggaaaagcataagaatt 54
             |||||||||||||||||||| ||||
Sbjct: 43559 attatgggggaaaagcataataatt 43535
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>gb|AF271358.1| Oryza sativa (indica cultivar-group) phospholipase D (RPLD5) gene,
            complete cds
          Length = 6300

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 209  ttcctcttcctcttctcctgc 229
            |||||||||||||||||||||
Sbjct: 1358 ttcctcttcctcttctcctgc 1338
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>gb|L25598.1| Caenorhabditis elegans cosmid C06G4, complete sequence
          Length = 29122

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 310  agttcatcatcatcatcagga 330
            |||||||||||||||||||||
Sbjct: 8097 agttcatcatcatcatcagga 8077
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>gb|AC140914.20| Medicago truncatula clone mth2-18h17, complete sequence
          Length = 129792

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 307   caaagttcatcatcatcatca 327
             |||||||||||||||||||||
Sbjct: 18048 caaagttcatcatcatcatca 18028
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>ref|NM_171886.2| Caenorhabditis elegans CaLPain family member (clp-1) (clp-1) mRNA,
            complete cds
          Length = 2562

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 310  agttcatcatcatcatcagga 330
            |||||||||||||||||||||
Sbjct: 1967 agttcatcatcatcatcagga 1947
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>ref|NM_066339.3| Caenorhabditis elegans CaLPain family member (clp-1) (clp-1) mRNA,
            complete cds
          Length = 2570

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 310  agttcatcatcatcatcagga 330
            |||||||||||||||||||||
Sbjct: 1987 agttcatcatcatcatcagga 1967
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>ref|NM_066340.3| Caenorhabditis elegans CaLPain family member (clp-1) (clp-1) mRNA,
            complete cds
          Length = 2445

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 310  agttcatcatcatcatcagga 330
            |||||||||||||||||||||
Sbjct: 2132 agttcatcatcatcatcagga 2112
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>dbj|AK085840.1| Mus musculus 16 days neonate heart cDNA, RIKEN full-length enriched
           library, clone:D830015N20 product:unclassifiable, full
           insert sequence
          Length = 3711

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 attcctcttcctcttctcctg 228
           |||||||||||||||||||||
Sbjct: 127 attcctcttcctcttctcctg 147
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 209      ttcctcttcctcttctcctgc 229
                |||||||||||||||||||||
Sbjct: 35140995 ttcctcttcctcttctcctgc 35141015
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>gb|AC116956.2| Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4,
              complete sequence
          Length = 266544

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 306    tcaaagttcatcatcatcatc 326
              |||||||||||||||||||||
Sbjct: 225179 tcaaagttcatcatcatcatc 225159
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>gb|AC154140.7| Mus musculus chromosome 1, clone RP23-184B11, complete sequence
          Length = 233171

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 206   gaattcctcttcctcttctcc 226
             |||||||||||||||||||||
Sbjct: 92044 gaattcctcttcctcttctcc 92064
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>dbj|AK069703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027C22, full
           insert sequence
          Length = 2733

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 209 ttcctcttcctcttctcctgc 229
           |||||||||||||||||||||
Sbjct: 90  ttcctcttcctcttctcctgc 70
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>gb|AC125443.8| Mus musculus chromosome 1, clone RP24-493N12, complete sequence
          Length = 156248

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 24     gaaaaaattatgggggaaaag 44
              |||||||||||||||||||||
Sbjct: 119257 gaaaaaattatgggggaaaag 119237
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>gb|AC121256.22| Mus musculus chromosome 1, clone RP24-576N23, complete sequence
          Length = 182551

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 206    gaattcctcttcctcttctcc 226
              |||||||||||||||||||||
Sbjct: 179081 gaattcctcttcctcttctcc 179061
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>gb|AC073597.20| Homo sapiens Xp BAC RP11-793P1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 120000

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 209    ttcctcttcctcttctcctgccaga 233
              ||||| |||||||||||||||||||
Sbjct: 100950 ttccttttcctcttctcctgccaga 100926
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>gb|AC166248.20| Mus musculus  BAC RP23-311A8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 182636

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 171    taattagttcttatccacttccta 194
              ||||||||||||| ||||||||||
Sbjct: 170806 taattagttcttacccacttccta 170783
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>ref|XM_639792.1| Dictyostelium discoideum hypothetical protein (DDB0168905), partial
            mRNA
          Length = 13482

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  aaagttcatcatcatcatca 327
            ||||||||||||||||||||
Sbjct: 2003 aaagttcatcatcatcatca 2022
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>ref|XM_635475.1| Dictyostelium discoideum hypothetical protein (DDB0204595), partial
           mRNA
          Length = 1422

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 308 aaagttcatcatcatcatca 327
           ||||||||||||||||||||
Sbjct: 662 aaagttcatcatcatcatca 681
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>ref|XM_631434.1| Dictyostelium discoideum hypothetical protein (DDB0188114), partial
            mRNA
          Length = 1683

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 308  aaagttcatcatcatcatca 327
            ||||||||||||||||||||
Sbjct: 1139 aaagttcatcatcatcatca 1158
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>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence
          Length = 1590432

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     gaaaaaattatgggggaaaa 43
              ||||||||||||||||||||
Sbjct: 397165 gaaaaaattatgggggaaaa 397184
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>gb|AC091702.3| Trypanosoma brucei chromosome 4 clone RPCI93-2L9, complete sequence
          Length = 161383

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    gaaaaaattatgggggaaaa 43
             ||||||||||||||||||||
Sbjct: 98481 gaaaaaattatgggggaaaa 98500
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>gb|AC115036.10| Mus musculus chromosome 7, clone RP24-274F20, complete sequence
          Length = 173506

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    ttcctcttcctcttctcctg 228
              ||||||||||||||||||||
Sbjct: 105419 ttcctcttcctcttctcctg 105438
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>gb|AC115301.7| Mus musculus BAC clone RP24-83E2 from chromosome 7, complete sequence
          Length = 175603

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   ttcctcttcctcttctcctg 228
             ||||||||||||||||||||
Sbjct: 62889 ttcctcttcctcttctcctg 62870
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>gb|BC051671.1| Mus musculus prolactin-like protein E, mRNA (cDNA clone MGC:60663
           IMAGE:30018275), complete cds
          Length = 959

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 309 aagttcatcatcatcatcag 328
           ||||||||||||||||||||
Sbjct: 277 aagttcatcatcatcatcag 296
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>gb|AC166290.7| Mus musculus  BAC RP23-14P17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 242055

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 171    taattagttcttatccacttccta 194
              ||||||||||||| ||||||||||
Sbjct: 209893 taattagttcttacccacttccta 209916
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>gb|AC124600.5| Mus musculus BAC clone RP23-25H7 from chromosome 16, complete sequence
          Length = 225102

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    gagatcatcacagatatatc 277
              ||||||||||||||||||||
Sbjct: 121124 gagatcatcacagatatatc 121143
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>gb|AY488172.1| Capsicum annuum Ran protein/TC4 protein mRNA, complete cds
          Length = 748

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 ttcatcatcatcatcaggaa 331
           ||||||||||||||||||||
Sbjct: 664 ttcatcatcatcatcaggaa 645
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>emb|Z48621.1|CER07B1 Caenorhabditis elegans Cosmid R07B1, complete sequence
          Length = 44209

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  aagttcatcatcatcatcag 328
            ||||||||||||||||||||
Sbjct: 2703 aagttcatcatcatcatcag 2722
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>emb|BX539321.14| Zebrafish DNA sequence from clone CH211-223F3 in linkage group 9,
              complete sequence
          Length = 180633

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    aaagttcatcatcatcatca 327
              ||||||||||||||||||||
Sbjct: 143779 aaagttcatcatcatcatca 143798
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>gb|AC055872.23| Homo sapiens chromosome 17, clone RP11-636N17, complete sequence
          Length = 202360

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   cctcttcctcttctcctgcc 230
             ||||||||||||||||||||
Sbjct: 10037 cctcttcctcttctcctgcc 10056
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>ref|NM_008930.1| Mus musculus prolactin-like protein E (Prlpe), mRNA
          Length = 933

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 309 aagttcatcatcatcatcag 328
           ||||||||||||||||||||
Sbjct: 284 aagttcatcatcatcatcag 303
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>gb|AC146747.7| Medicago truncatula clone mth2-14h5, complete sequence
          Length = 129204

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   tcaaagttcatcatcatcat 325
             ||||||||||||||||||||
Sbjct: 27898 tcaaagttcatcatcatcat 27917
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>gb|AC146552.16| Medicago truncatula clone mth2-9d1, complete sequence
          Length = 113088

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    aaaaaattatgggggaaaag 44
             ||||||||||||||||||||
Sbjct: 47584 aaaaaattatgggggaaaag 47565
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>gb|AC155341.1| Brassica rapa subsp. pekinensis chromosome 6 clone KBrH004D11, complete
             sequence
          Length = 106476

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 29    aattatgggggaaaagcataagaa 52
             |||||||||||||||| |||||||
Sbjct: 33008 aattatgggggaaaagaataagaa 32985
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>emb|AL445240.8| Human DNA sequence from clone RP11-242A15 on chromosome 10 Contains the
             5' end of a novel gene, complete sequence
          Length = 152898

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   tcatcatcatcatcaggaat 332
             ||||||||||||||||||||
Sbjct: 78888 tcatcatcatcatcaggaat 78869
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>ref|XM_780649.1| PREDICTED: Strongylocentrotus purpuratus similar to
           N-acylsphingosine amidohydrolase 2 (LOC580598), mRNA
          Length = 1791

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 239 ccttattgccactgctgatgagat 262
           |||||||| |||||||||||||||
Sbjct: 337 ccttattgtcactgctgatgagat 314
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>gb|AY318757.1| Oryza sativa (indica cultivar-group) cohesin-like protein mRNA,
            complete cds
          Length = 3230

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 315  atcatcatcatcaggaatgc 334
            ||||||||||||||||||||
Sbjct: 1749 atcatcatcatcaggaatgc 1730
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>emb|AL031320.6|HS20N2 Human DNA sequence from clone RP1-20N2 on chromosome 6q24 Contains the
              gene for a novel protein similar to yeast and bacterial
              cytosine deaminase, a novel protein similar to tubulin beta
              polypeptide 4 member Q (TUBB4Q) (probably a pseudogene),
              the PEX3 gene for peroxisomal biogenesis factor 3 (peroxin
              3), a VDAC1 (voltage-dependent anion channel 1
              (Plasmalemmal porin)) pseudogene, the gene for a novel
              protein similar to tissue fucosidase alpha-L-1, a novel
              gene and two CpG islands, complete sequence
          Length = 133574

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     gaacatatctgaatacaaga 92
              ||||||||||||||||||||
Sbjct: 116377 gaacatatctgaatacaaga 116358
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>emb|BX842656.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 11/11
          Length = 307337

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    tgccactgctgatgagatca 264
              ||||||||||||||||||||
Sbjct: 259863 tgccactgctgatgagatca 259882
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>emb|AL590522.7| Mouse DNA sequence from clone RP23-117C5 on chromosome 13 Contains the
              Prlpc2, Prlpe and Prlpf genes for prolactin-like proteins
              C2 (1600019F10RIK, Prlpc beta), E (Prlpg) and F (Plp-f),
              and genes 1600032B14RIK, 1600017L04RIK (3830403L08RIK) and
              1600014J19RIK for novel proteins similar to prolactin,
              complete sequence
          Length = 211776

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    aagttcatcatcatcatcag 328
              ||||||||||||||||||||
Sbjct: 168063 aagttcatcatcatcatcag 168044
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>emb|BX530077.4| Zebrafish DNA sequence from clone CH211-22D5 in linkage group 21,
             complete sequence
          Length = 200625

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   ttcctaaatacatttctgaa 208
             ||||||||||||||||||||
Sbjct: 49783 ttcctaaatacatttctgaa 49764
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>gb|AC118002.2| Homo sapiens chromosome 11, clone RP11-258H15, complete sequence
          Length = 160686

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 194   aaatacatttctgaattcctcttcctct 221
             ||||||||||||||||||| | ||||||
Sbjct: 13002 aaatacatttctgaattccccatcctct 13029
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>gb|AC110056.5| Homo sapiens chromosome 11, clone CTD-2063L20, complete sequence
          Length = 74874

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 194   aaatacatttctgaattcctcttcctct 221
             ||||||||||||||||||| | ||||||
Sbjct: 49426 aaatacatttctgaattccccatcctct 49399
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>gb|AC104040.3| Homo sapiens chromosome 8, clone CTD-2023L15, complete sequence
          Length = 136646

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 304   aatcaaagttcatcatcatcatca 327
             ||||| ||||||||||||||||||
Sbjct: 62492 aatcacagttcatcatcatcatca 62469
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>dbj|AK146050.1| Mus musculus 11 days pregnant adult female placenta cDNA, RIKEN
           full-length enriched library, clone:I530026M05
           product:prolactin-like protein E, full insert sequence
          Length = 952

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 309 aagttcatcatcatcatcag 328
           ||||||||||||||||||||
Sbjct: 296 aagttcatcatcatcatcag 315
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>dbj|AK141309.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:C430026D01
           product:prolactin-like protein E, full insert sequence
          Length = 916

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 309 aagttcatcatcatcatcag 328
           ||||||||||||||||||||
Sbjct: 296 aagttcatcatcatcatcag 315
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>gb|AC013476.9| Homo sapiens BAC clone RP11-525G12 from 2, complete sequence
          Length = 142305

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 313   tcatcatcatcatcaggaatgctc 336
             ||||||||||||||||| ||||||
Sbjct: 96238 tcatcatcatcatcagggatgctc 96261
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>gb|AC090349.7| Homo sapiens chromosome 18, clone RP11-844N22, complete sequence
          Length = 132191

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   catttctgaattcctcttcc 218
             ||||||||||||||||||||
Sbjct: 20903 catttctgaattcctcttcc 20884
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>ref|XM_685600.1| PREDICTED: Danio rerio similar to MxG protein (LOC562203), partial
           mRNA
          Length = 1693

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 253 ctgatgagatcatcacagat 272
           ||||||||||||||||||||
Sbjct: 437 ctgatgagatcatcacagat 418
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>gb|AC182738.1| Gasterosteus aculeatus clone VMRC26-26C14, complete sequence
          Length = 168680

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    ttcctcttcctcttctcctg 228
              ||||||||||||||||||||
Sbjct: 142046 ttcctcttcctcttctcctg 142027



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    ttcctcttcctcttctcctg 228
              ||||||||||||||||||||
Sbjct: 128494 ttcctcttcctcttctcctg 128475
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>dbj|AK028371.1| Mus musculus 18 days pregnant adult female placenta and extra
           embryonic tissue cDNA, RIKEN full-length enriched
           library, clone:3830429G09 product:prolactin-like protein
           E, full insert sequence
          Length = 1284

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 309 aagttcatcatcatcatcag 328
           ||||||||||||||||||||
Sbjct: 293 aagttcatcatcatcatcag 312
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>gb|AC117176.2| Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4,
             complete sequence
          Length = 182871

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   aaagttcatcatcatcatca 327
             ||||||||||||||||||||
Sbjct: 58874 aaagttcatcatcatcatca 58893
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>gb|AC087625.12| Homo sapiens chromosome 8, clone RP11-525O22, complete sequence
          Length = 166763

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 207   aattcctcttcctcttctcctgcc 230
             ||||||||||||||||| ||||||
Sbjct: 23150 aattcctcttcctcttcccctgcc 23173
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>gb|AC140936.1| Gallus gallus chromosome UNK clone TAM31-90P6, complete sequence
          Length = 89690

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   ctctcttactgctggaatac 360
             ||||||||||||||||||||
Sbjct: 13549 ctctcttactgctggaatac 13530
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>gb|AC087273.5| Homo sapiens chromosome 8, clone RP11-156K13, complete sequence
          Length = 160835

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 207   aattcctcttcctcttctcctgcc 230
             ||||||||||||||||| ||||||
Sbjct: 39305 aattcctcttcctcttcccctgcc 39282
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>gb|AC154743.2| Mus musculus BAC clone RP24-392N10 from 13, complete sequence
          Length = 141272

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 209   ttcctcttcctcttctcctgccag 232
             ||||||| ||||||||||||||||
Sbjct: 69456 ttcctctccctcttctcctgccag 69433
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>emb|BX936311.12| Zebrafish DNA sequence from clone DKEY-53B10 in linkage group 22,
             complete sequence
          Length = 100387

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   aaagttcatcatcatcatca 327
             ||||||||||||||||||||
Sbjct: 22392 aaagttcatcatcatcatca 22373
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>emb|BX649398.4| Zebrafish DNA sequence from clone DKEY-202B22 in linkage group 4,
             complete sequence
          Length = 166156

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   cttcctaaatacatttctga 207
             ||||||||||||||||||||
Sbjct: 34293 cttcctaaatacatttctga 34274
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>dbj|AP006303.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-285B2, complete
             sequence
          Length = 167054

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 207   aattcctcttcctcttctcctgcc 230
             ||||||||||||||||| ||||||
Sbjct: 67537 aattcctcttcctcttcccctgcc 67560
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>dbj|AP003172.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-822D3, complete
             sequences
          Length = 33994

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   ctgaattcctcttcctcttc 223
             ||||||||||||||||||||
Sbjct: 27228 ctgaattcctcttcctcttc 27209
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>emb|BX537633.1|HSM806421 Homo sapiens mRNA; cDNA DKFZp686J08208 (from clone DKFZp686J08208)
          Length = 2770

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 73   gaacatatctgaatacaaga 92
            ||||||||||||||||||||
Sbjct: 1476 gaacatatctgaatacaaga 1495
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>gb|AC005668.1|AC005668 Homo sapiens chromosome 17, clone hRPK.243_K_12, complete sequence
          Length = 152355

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    cctcttcctcttctcctgcc 230
              ||||||||||||||||||||
Sbjct: 143911 cctcttcctcttctcctgcc 143930
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>emb|AL732610.16| Zebrafish DNA sequence from clone CH211-12N8, complete sequence
          Length = 176982

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   aaagttcatcatcatcatca 327
             ||||||||||||||||||||
Sbjct: 58954 aaagttcatcatcatcatca 58973
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>gb|AF011381.1|AF011381 Mus musculus placental PRL-like protein E (PLP-E) mRNA, complete
           cds
          Length = 933

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 309 aagttcatcatcatcatcag 328
           ||||||||||||||||||||
Sbjct: 284 aagttcatcatcatcatcag 303
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>emb|CT025552.9| Mouse DNA sequence from clone RP24-270A4 on chromosome 13, complete
              sequence
          Length = 206266

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 209    ttcctcttcctcttctcctgccag 232
              ||||||| ||||||||||||||||
Sbjct: 145717 ttcctctccctcttctcctgccag 145740
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>gb|AF020525.1|AF020525 Mus musculus prolactin-like protein G precursor, mRNA, complete cds
          Length = 942

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 309 aagttcatcatcatcatcag 328
           ||||||||||||||||||||
Sbjct: 266 aagttcatcatcatcatcag 285
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>emb|AL954315.6| Mouse DNA sequence from clone RP23-105O1 on chromosome 2, complete
             sequence
          Length = 167210

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   tattgccactgctgatgaga 261
             ||||||||||||||||||||
Sbjct: 30717 tattgccactgctgatgaga 30698
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>emb|AL928710.6| Mouse DNA sequence from clone RP23-255P20 on chromosome 2, complete
              sequence
          Length = 180748

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 336    cttccctctcttactgctgg 355
              ||||||||||||||||||||
Sbjct: 147311 cttccctctcttactgctgg 147292
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>gb|AC144795.5| Mus musculus BAC clone RP24-374I3 from chromosome 6, complete sequence
          Length = 184775

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 171   taattagttcttatccacttccta 194
             ||||||||||||| ||||||||||
Sbjct: 18943 taattagttcttacccacttccta 18966
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>dbj|AB020866.1| Homo sapiens genomic DNA of 8p21.3-p22 anti-oncogene of hepatocellular
             colorectal and non-small cell lung cancer , segment 9/11
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 207   aattcctcttcctcttctcctgcc 230
             ||||||||||||||||| ||||||
Sbjct: 45886 aattcctcttcctcttcccctgcc 45909


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,147,585
Number of Sequences: 3902068
Number of extensions: 5147585
Number of successful extensions: 273751
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 273231
Number of HSP's gapped (non-prelim): 520
length of query: 400
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 378
effective length of database: 17,147,199,772
effective search space: 6481641513816
effective search space used: 6481641513816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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