ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12) 89 2e-18
2LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12) 72 5e-13
3LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygena... 67 2e-11
4LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase... 64 1e-10
5LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12) 56 2e-08
6LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12) 44 1e-04
7LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94) 44 1e-04
8LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12) 43 2e-04
9LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12) 42 3e-04
10LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12) 42 4e-04
11LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2) 40 0.002
12LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment) 40 0.002
13LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1) 39 0.003
14LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12) 39 0.003
15LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12) 39 0.004
16LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3) 38 0.006
17LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12) 37 0.010
18LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12) 37 0.010
19LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12) 37 0.017
20LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 31 0.94
21LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12) 31 0.94
22LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precur... 31 0.94
23LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC... 30 1.2
24LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1... 30 2.1
25WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC... 28 6.1
26LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12) 28 7.9

>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 89.4 bits (220), Expect = 2e-18
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = -3

Query: 277 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN
Sbjct: 819 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 858



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>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)|
          Length = 866

 Score = 71.6 bits (174), Expect = 5e-13
 Identities = 33/39 (84%), Positives = 35/39 (89%)
 Frame = -3

Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           D  LKNRNGPA+FPYMLLYPNTSD  GAAAG+TAKGIPN
Sbjct: 824 DAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPN 862



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>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)|
          Length = 863

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 29/39 (74%), Positives = 34/39 (87%)
 Frame = -3

Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           DP LKNR GPA FPY L++PNTSD+KGAA G+TA+GIPN
Sbjct: 821 DPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPN 859



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>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)|
          Length = 870

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 29/39 (74%), Positives = 31/39 (79%)
 Frame = -3

Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           DP  KNR GP  FPY LLYPNTSD KG AAGL+A+GIPN
Sbjct: 828 DPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPN 866



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>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)|
          Length = 877

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 28/37 (75%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
 Frame = -3

Query: 265 LKNRNGPAKFPYMLLYPNTSD-HKGAAAGLTAKGIPN 158
           LKNRNGP K PYMLLYPNTSD  K    GLTA GIPN
Sbjct: 837 LKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPN 873



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>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)|
          Length = 866

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = -3

Query: 277 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           +D  L+NR GP K PY LLYP++ +      GLT +GIPN
Sbjct: 829 NDESLRNRYGPVKMPYTLLYPSSEE------GLTCRGIPN 862



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>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)|
          Length = 853

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 21/39 (53%), Positives = 26/39 (66%)
 Frame = -3

Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           D  L+NR GPAK PY LLYP++ +      GLT +GIPN
Sbjct: 817 DETLRNRYGPAKMPYTLLYPSSEE------GLTFRGIPN 849



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>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)|
          Length = 861

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 19/40 (47%), Positives = 28/40 (70%)
 Frame = -3

Query: 277 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           +D +L+NR+GP + PY LLYP++ +      GLT +GIPN
Sbjct: 824 NDEKLRNRHGPVEMPYTLLYPSSKE------GLTFRGIPN 857



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>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)|
          Length = 864

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = -3

Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           DP L+NR GP + PY LL      H+ +  GLT KGIPN
Sbjct: 828 DPSLRNRTGPVQLPYTLL------HRSSEEGLTFKGIPN 860



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>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 20/39 (51%), Positives = 23/39 (58%)
 Frame = -3

Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           D  L+NRNGP K PY +L P   D      GLT +GIPN
Sbjct: 825 DSSLRNRNGPVKMPYTVLLPTCEDE-----GLTFRGIPN 858



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>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)|
          Length = 865

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = -3

Query: 277 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           +D  L NR GP + PY LL+PN+        GLT +GIPN
Sbjct: 829 NDQSLSNRLGPVQLPYTLLHPNSE-------GLTCRGIPN 861



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>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)|
          Length = 741

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 19/38 (50%), Positives = 25/38 (65%)
 Frame = -3

Query: 277 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGI 164
           +D  L+NR GPAK PY LLYP++ +      GLT +GI
Sbjct: 710 NDETLRNRTGPAKMPYTLLYPSSEE------GLTFRGI 741



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>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)|
          Length = 839

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = -3

Query: 277 HDPELK-NRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           +DP L+ NR GP + PY LLYP++ +      GLT +GIPN
Sbjct: 801 NDPSLQGNRLGPVQLPYTLLYPSSEE------GLTFRGIPN 835



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>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)|
          Length = 859

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = -3

Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           KNR+GP   PY LL+P + +      GLT KGIPN
Sbjct: 827 KNRSGPVNVPYTLLFPTSEE------GLTGKGIPN 855



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>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)|
          Length = 864

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = -3

Query: 277 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           +DP L +R GP + PY LL+P++ +      GLT +GIPN
Sbjct: 827 NDPSLYHRVGPVQLPYTLLHPSSKE------GLTFRGIPN 860



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>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)|
          Length = 857

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = -3

Query: 277 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           +D +L+NR GP + PY LL P++ +      GLT +GIPN
Sbjct: 820 NDEKLRNRCGPVQMPYTLLLPSSKE------GLTFRGIPN 853



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>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 859

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = -3

Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           D  LKNR G  K PY LL+P++        G+T +GIPN
Sbjct: 823 DETLKNRTGLVKMPYTLLFPSSE------GGVTGRGIPN 855



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>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 861

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 19/39 (48%), Positives = 22/39 (56%)
 Frame = -3

Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           D  L NR+GP   PY LL+P +        GLT KGIPN
Sbjct: 825 DNILTNRSGPVNAPYTLLFPTSE------GGLTGKGIPN 857



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>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)|
          Length = 860

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 18/36 (50%), Positives = 20/36 (55%)
 Frame = -3

Query: 265 LKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           L NR GP   PY LL+P +        GLT KGIPN
Sbjct: 827 LTNRTGPVNAPYTLLFPTSE------GGLTGKGIPN 856



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>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
           (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 277 HDPELKNRNGPAKFPYMLLYPNTSD 203
           +DP+ KNR+G    PY+LL P+  D
Sbjct: 889 NDPDRKNRHGAGMVPYVLLRPSDGD 913



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>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)|
          Length = 899

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           DP  +NR G    PY L+ P+      +  G+T +G+PN
Sbjct: 863 DPSRRNRCGAGVLPYELMAPS------SGPGITCRGVPN 895



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>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC|
            1.13.11.12)
          Length = 941

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 274  DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
            D +LKNR G    PY L+ P +       AG+T  GIPN
Sbjct: 905  DRKLKNRCGAGILPYQLMKPFSD------AGVTGMGIPN 937



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>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)|
           (LOX2:Hv:3)
          Length = 896

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -3

Query: 277 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           ++PE KNR G    PY LL P +        G+T +GIPN
Sbjct: 859 NNPENKNRCGAGIVPYELLKPFSE------PGVTGRGIPN 892



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>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)|
          Length = 924

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           D +LKNR G    PY L+ P +       +G+T  GIPN
Sbjct: 888 DRKLKNRCGAGILPYQLMKPFSD------SGVTGMGIPN 920



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>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)|
          Length = 1336

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -2

Query: 272  PGAQEPQRPG*VSLHAALPQHLRPQGRRCRAYRQGHPQQH 153
            PGA E +RPG        P+  R +GRR  ++R+G P +H
Sbjct: 1074 PGAWEGRRPGDERFPRD-PEDPRFRGRREESFRRGAPPRH 1112



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>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)|
          Length = 918

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158
           KNR G    PY LL P+      +  G+T +G+PN
Sbjct: 886 KNRCGAGVLPYELLAPS------SPPGVTCRGVPN 914


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,531,460
Number of Sequences: 219361
Number of extensions: 595031
Number of successful extensions: 1311
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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