Clone Name | rbastl47c05 |
---|---|
Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 89.4 bits (220), Expect = 2e-18 Identities = 40/40 (100%), Positives = 40/40 (100%) Frame = -3 Query: 277 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN Sbjct: 819 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 858
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 71.6 bits (174), Expect = 5e-13 Identities = 33/39 (84%), Positives = 35/39 (89%) Frame = -3 Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 D LKNRNGPA+FPYMLLYPNTSD GAAAG+TAKGIPN Sbjct: 824 DAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPN 862
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 66.6 bits (161), Expect = 2e-11 Identities = 29/39 (74%), Positives = 34/39 (87%) Frame = -3 Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 DP LKNR GPA FPY L++PNTSD+KGAA G+TA+GIPN Sbjct: 821 DPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPN 859
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 63.5 bits (153), Expect = 1e-10 Identities = 29/39 (74%), Positives = 31/39 (79%) Frame = -3 Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 DP KNR GP FPY LLYPNTSD KG AAGL+A+GIPN Sbjct: 828 DPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPN 866
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 56.2 bits (134), Expect = 2e-08 Identities = 28/37 (75%), Positives = 28/37 (75%), Gaps = 1/37 (2%) Frame = -3 Query: 265 LKNRNGPAKFPYMLLYPNTSD-HKGAAAGLTAKGIPN 158 LKNRNGP K PYMLLYPNTSD K GLTA GIPN Sbjct: 837 LKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPN 873
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 43.5 bits (101), Expect = 1e-04 Identities = 20/40 (50%), Positives = 26/40 (65%) Frame = -3 Query: 277 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +D L+NR GP K PY LLYP++ + GLT +GIPN Sbjct: 829 NDESLRNRYGPVKMPYTLLYPSSEE------GLTCRGIPN 862
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 43.5 bits (101), Expect = 1e-04 Identities = 21/39 (53%), Positives = 26/39 (66%) Frame = -3 Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 D L+NR GPAK PY LLYP++ + GLT +GIPN Sbjct: 817 DETLRNRYGPAKMPYTLLYPSSEE------GLTFRGIPN 849
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 42.7 bits (99), Expect = 2e-04 Identities = 19/40 (47%), Positives = 28/40 (70%) Frame = -3 Query: 277 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +D +L+NR+GP + PY LLYP++ + GLT +GIPN Sbjct: 824 NDEKLRNRHGPVEMPYTLLYPSSKE------GLTFRGIPN 857
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 42.4 bits (98), Expect = 3e-04 Identities = 20/39 (51%), Positives = 24/39 (61%) Frame = -3 Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 DP L+NR GP + PY LL H+ + GLT KGIPN Sbjct: 828 DPSLRNRTGPVQLPYTLL------HRSSEEGLTFKGIPN 860
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 42.0 bits (97), Expect = 4e-04 Identities = 20/39 (51%), Positives = 23/39 (58%) Frame = -3 Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 D L+NRNGP K PY +L P D GLT +GIPN Sbjct: 825 DSSLRNRNGPVKMPYTVLLPTCEDE-----GLTFRGIPN 858
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 39.7 bits (91), Expect = 0.002 Identities = 19/40 (47%), Positives = 24/40 (60%) Frame = -3 Query: 277 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +D L NR GP + PY LL+PN+ GLT +GIPN Sbjct: 829 NDQSLSNRLGPVQLPYTLLHPNSE-------GLTCRGIPN 861
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 39.7 bits (91), Expect = 0.002 Identities = 19/38 (50%), Positives = 25/38 (65%) Frame = -3 Query: 277 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGI 164 +D L+NR GPAK PY LLYP++ + GLT +GI Sbjct: 710 NDETLRNRTGPAKMPYTLLYPSSEE------GLTFRGI 741
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 38.9 bits (89), Expect = 0.003 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%) Frame = -3 Query: 277 HDPELK-NRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +DP L+ NR GP + PY LLYP++ + GLT +GIPN Sbjct: 801 NDPSLQGNRLGPVQLPYTLLYPSSEE------GLTFRGIPN 835
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/35 (51%), Positives = 22/35 (62%) Frame = -3 Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 KNR+GP PY LL+P + + GLT KGIPN Sbjct: 827 KNRSGPVNVPYTLLFPTSEE------GLTGKGIPN 855
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 38.5 bits (88), Expect = 0.004 Identities = 18/40 (45%), Positives = 26/40 (65%) Frame = -3 Query: 277 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +DP L +R GP + PY LL+P++ + GLT +GIPN Sbjct: 827 NDPSLYHRVGPVQLPYTLLHPSSKE------GLTFRGIPN 860
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 38.1 bits (87), Expect = 0.006 Identities = 18/40 (45%), Positives = 26/40 (65%) Frame = -3 Query: 277 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 +D +L+NR GP + PY LL P++ + GLT +GIPN Sbjct: 820 NDEKLRNRCGPVQMPYTLLLPSSKE------GLTFRGIPN 853
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 37.4 bits (85), Expect = 0.010 Identities = 18/39 (46%), Positives = 23/39 (58%) Frame = -3 Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 D LKNR G K PY LL+P++ G+T +GIPN Sbjct: 823 DETLKNRTGLVKMPYTLLFPSSE------GGVTGRGIPN 855
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 37.4 bits (85), Expect = 0.010 Identities = 19/39 (48%), Positives = 22/39 (56%) Frame = -3 Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 D L NR+GP PY LL+P + GLT KGIPN Sbjct: 825 DNILTNRSGPVNAPYTLLFPTSE------GGLTGKGIPN 857
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 36.6 bits (83), Expect = 0.017 Identities = 18/36 (50%), Positives = 20/36 (55%) Frame = -3 Query: 265 LKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 L NR GP PY LL+P + GLT KGIPN Sbjct: 827 LTNRTGPVNAPYTLLFPTSE------GGLTGKGIPN 856
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 30.8 bits (68), Expect = 0.94 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = -3 Query: 277 HDPELKNRNGPAKFPYMLLYPNTSD 203 +DP+ KNR+G PY+LL P+ D Sbjct: 889 NDPDRKNRHGAGMVPYVLLRPSDGD 913
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 30.8 bits (68), Expect = 0.94 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -3 Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 DP +NR G PY L+ P+ + G+T +G+PN Sbjct: 863 DPSRRNRCGAGVLPYELMAPS------SGPGITCRGVPN 895
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 30.8 bits (68), Expect = 0.94 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = -3 Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 D +LKNR G PY L+ P + AG+T GIPN Sbjct: 905 DRKLKNRCGAGILPYQLMKPFSD------AGVTGMGIPN 937
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 30.4 bits (67), Expect = 1.2 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = -3 Query: 277 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 ++PE KNR G PY LL P + G+T +GIPN Sbjct: 859 NNPENKNRCGAGIVPYELLKPFSE------PGVTGRGIPN 892
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 29.6 bits (65), Expect = 2.1 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = -3 Query: 274 DPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 D +LKNR G PY L+ P + +G+T GIPN Sbjct: 888 DRKLKNRCGAGILPYQLMKPFSD------SGVTGMGIPN 920
>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)| Length = 1336 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -2 Query: 272 PGAQEPQRPG*VSLHAALPQHLRPQGRRCRAYRQGHPQQH 153 PGA E +RPG P+ R +GRR ++R+G P +H Sbjct: 1074 PGAWEGRRPGDERFPRD-PEDPRFRGRREESFRRGAPPRH 1112
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -3 Query: 262 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 158 KNR G PY LL P+ + G+T +G+PN Sbjct: 886 KNRCGAGVLPYELLAPS------SPPGVTCRGVPN 914 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,531,460 Number of Sequences: 219361 Number of extensions: 595031 Number of successful extensions: 1311 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 1288 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1301 length of database: 80,573,946 effective HSP length: 68 effective length of database: 65,657,398 effective search space used: 1575777552 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)