>MATK_TORCL (Q9MVV7) Maturase K (Intron maturase)|
          Length = 495

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 235 PHSSFRTANRAISDTPKVPALRTVVHDGPPSFTTQELQ 348
           P    RT  R I DTP +  LR ++H+   SF+ + LQ
Sbjct: 156 PEILVRTFRRWIRDTPSLHLLRFILHEWRNSFSAENLQ 193

>MATK_AMEAR (Q9MSR8) Maturase K (Intron maturase)|
          Length = 509

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 235 PHSSFRTANRAISDTPKVPALRTVVHDGPPSFTTQELQ 348
           P    RT  R I DTP +  LR ++H    SF+ + LQ
Sbjct: 156 PELLVRTFRRWIRDTPSLHLLRFILHSWKNSFSAENLQ 193

>MATK_TAXCU (Q7IS11) Maturase K (Intron maturase)|
          Length = 510

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 235 PHSSFRTANRAISDTPKVPALRTVVHDGPPSFTTQELQ 348
           P    RT  R I D P +  LR+++H+   SF+ + LQ
Sbjct: 158 PEILVRTFRRWIRDAPSLHLLRSILHEWRNSFSAENLQ 195

>MATK_TAXBA (Q9MVV8) Maturase K (Intron maturase)|
          Length = 504

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 235 PHSSFRTANRAISDTPKVPALRTVVHDGPPSFTTQELQ 348
           P    RT  R I D P +  LR+++H+   SF+ + LQ
Sbjct: 158 PEILVRTFRRWIRDAPSLHLLRSILHEWRNSFSAENLQ 195

>MATK_SEQSE (Q9MSS8) Maturase K (Intron maturase)|
          Length = 509

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 235 PHSSFRTANRAISDTPKVPALRTVVHDGPPSFTTQELQ 348
           P    R   R I DTP +  LR+++H+   SF+ + LQ
Sbjct: 156 PEILVRIFRRWIRDTPSLHLLRSILHEWKNSFSRENLQ 193

>SPIKE_CVCAE (Q65984) Spike glycoprotein precursor (Peplomer protein) (E2)|
          Length = 1453

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
 Frame = +2

Query: 113 LVLNL*HLFWNGGSIICYINPG--QLTVFAAKRKNRMINNLVCHTVHSGQPIEPSQIPQK 286
           +VL L  L ++  S+IC  N    Q  V        +I + + HT       EPS +   
Sbjct: 2   IVLILCLLLFSYNSVICTSNNDCVQGNVTQLPGNENIIKDFLFHTFKE----EPSVVVGG 57

Query: 287 YQPSEPWY--MMDLLVLPLKNCSDIHAW 364
           Y P+E WY           K+ S+IHA+
Sbjct: 58  YYPTEVWYNCSRSATTTAYKDFSNIHAF 85

>MATK_CEPFR (Q9MSA7) Maturase K (Intron maturase)|
          Length = 502

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 235 PHSSFRTANRAISDTPKVPALRTVVHDGPPSFTTQELQ 348
           P    RT  R I D P +  LR+++H+   SF+ + LQ
Sbjct: 156 PEILVRTFRRWIRDAPFLDLLRSILHEWRNSFSAENLQ 193

>CLCN2_MOUSE (Q9R0A1) Chloride channel protein 2 (ClC-2)|
          Length = 908

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 320 GPSCTTVLRAGTFGVSEMARLAVLNELCGRP 228
           GPS +T L+ GT G  E A +A+ +  CG P
Sbjct: 710 GPSNSTSLQEGTTGNMESAGIALRSLFCGSP 740

>MATK_METGY (Q9MST4) Maturase K (Intron maturase)|
          Length = 509

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 235 PHSSFRTANRAISDTPKVPALRTVVHDGPPSFTTQELQ 348
           P    R   R I DTP +  LR+++H+   SF+   LQ
Sbjct: 156 PEILVRIFRRWIRDTPSLHLLRSILHEWQNSFSRDNLQ 193

>CLCN2_RAT (P35525) Chloride channel protein 2 (ClC-2)|
          Length = 907

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 320 GPSCTTVLRAGTFGVSEMARLAVLNELCGRP 228
           GPS  T L+ GT G  E A +A+ +  CG P
Sbjct: 708 GPSNATSLQEGTTGNMESAGIALRSLFCGSP 738

>MATK_CHALA (Q9MSV6) Maturase K (Intron maturase) (Fragment)|
          Length = 444

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 235 PHSSFRTANRAISDTPKVPALRTVVHDGPPSFTTQELQ*HTCMEKQTT 378
           P    R   R I D P +  LR+++H+   SF  + LQ     +++ T
Sbjct: 156 PEILVRIFRRWIRDVPSLHLLRSILHEWKKSFNRENLQKALITQRENT 203

>MATK_CUNLA (Q9MSV2) Maturase K (Intron maturase)|
          Length = 508

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 235 PHSSFRTANRAISDTPKVPALRTVVHDGPPSFTTQELQ*HTCMEKQTT 378
           P    R   R I D P +  LR+++H+   SF+ + LQ     +++ T
Sbjct: 156 PEILVRIFRRWIRDAPSLHLLRSILHEWKNSFSRENLQKALVTQRENT 203

>MATK_SCIVE (Q9MVV9) Maturase K (Intron maturase)|
          Length = 505

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 235 PHSSFRTANRAISDTPKVPALRTVVHDGPPSFTTQELQ 348
           P    RT  R + D P +  LR+++H+   S +T+ LQ
Sbjct: 156 PEILVRTFRRWMRDVPSLHLLRSILHEWRDSSSTENLQ 193

>MATK_CHAOB (Q9MSV4) Maturase K (Intron maturase)|
          Length = 509

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 235 PHSSFRTANRAISDTPKVPALRTVVHDGPPSFTTQELQ*HTCMEKQTT 378
           P    R   R I D P +  LR+++H+   SF  + LQ     +++ T
Sbjct: 156 PEILVRIFRRWIRDVPSLHLLRSILHEWKNSFNRENLQKALITQRENT 203

>MATK_CRYJA (Q9MVW4) Maturase K (Intron maturase)|
          Length = 507

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 235 PHSSFRTANRAISDTPKVPALRTVVHDGPPSFTTQELQ 348
           P    R   R I D P +  LR+++H+   SF+ + LQ
Sbjct: 156 PEILVRIFRRWIRDAPSLHLLRSILHEWKNSFSRENLQ 193

>ZEP2_HUMAN (P31629) Human immunodeficiency virus type I enhancer-binding protein|
            2 (HIV-EP2) (MHC-binding protein 2) (MBP-2)
          Length = 2446

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 205  QKPHDKQLGLPHSSFRTANRAISDTPKVPALRTVVHDG 318
            Q+PH   LG  H S R  +R     P   A    +HDG
Sbjct: 2355 QEPHQNPLGSAHVSIRHFSRPEPGQPCTSATHPDLHDG 2392

>PSD_SHIFL (P0A8K4) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)|
           [Contains: Phosphatidylserine decarboxylase alpha chain;
           Phosphatidylserine decarboxylase beta chain]
          Length = 322

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 28  DNIPPSSGKYYSLHLKINAVDLVQNLY*FSIEFVTLILERREYHMLHKP 174
           D I  + G  YSL   +    L+ +L+  +  FVT  L  R+YH +H P
Sbjct: 102 DKILQAKGHNYSLEALLAGNYLMADLF-RNGTFVTTYLSPRDYHRVHMP 149

>PSD_ECOLI (P0A8K1) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)|
           [Contains: Phosphatidylserine decarboxylase alpha chain;
           Phosphatidylserine decarboxylase beta chain]
          Length = 322

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 28  DNIPPSSGKYYSLHLKINAVDLVQNLY*FSIEFVTLILERREYHMLHKP 174
           D I  + G  YSL   +    L+ +L+  +  FVT  L  R+YH +H P
Sbjct: 102 DKILQAKGHNYSLEALLAGNYLMADLF-RNGTFVTTYLSPRDYHRVHMP 149

>PSD_ECOL6 (P0A8K2) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)|
           [Contains: Phosphatidylserine decarboxylase alpha chain;
           Phosphatidylserine decarboxylase beta chain]
          Length = 322

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 28  DNIPPSSGKYYSLHLKINAVDLVQNLY*FSIEFVTLILERREYHMLHKP 174
           D I  + G  YSL   +    L+ +L+  +  FVT  L  R+YH +H P
Sbjct: 102 DKILQAKGHNYSLEALLAGNYLMADLF-RNGTFVTTYLSPRDYHRVHMP 149

>PSD_ECO57 (P0A8K3) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)|
           [Contains: Phosphatidylserine decarboxylase alpha chain;
           Phosphatidylserine decarboxylase beta chain]
          Length = 322

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 28  DNIPPSSGKYYSLHLKINAVDLVQNLY*FSIEFVTLILERREYHMLHKP 174
           D I  + G  YSL   +    L+ +L+  +  FVT  L  R+YH +H P
Sbjct: 102 DKILQAKGHNYSLEALLAGNYLMADLF-RNGTFVTTYLSPRDYHRVHMP 149

>PSD_HAEIN (P43789) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)|
           [Contains: Phosphatidylserine decarboxylase alpha chain;
           Phosphatidylserine decarboxylase beta chain]
          Length = 290

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +1

Query: 4   QVIQCAILDN--IPPSSGKYYSLH-LKINAVDLVQNLY*FSIEFVTLILERREYHMLHKP 174
           ++ +C  +D+  +  + G ++SL  L     +LV+     + EFVT  L  R+YH +H P
Sbjct: 98  RISECGHIDDNLLLQAKGHFFSLEDLLAEDKELVETFK--NGEFVTTYLSPRDYHRVHMP 155

>KATAM_ARATH (Q7XJ98) Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-)|
           (MURUS3 protein)
          Length = 619

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 257 PIEPSQIPQKYQPSEPWYMMDLLVLP 334
           PIEP   P K  P EP   +D  +LP
Sbjct: 85  PIEPHAAPSKPPPKEPLVTIDKPILP 110

>RRN3_HUMAN (Q9NYV6) RNA polymerase I-specific transcription initiation factor|
           RRN3 (Transcription initiation factor IA) (TIF-IA)
          Length = 651

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 272 QIPQKYQPSEPWYMMDLLV 328
           QI  +Y PS PW++M +LV
Sbjct: 191 QIIARYVPSTPWFLMPILV 209

>RRN3_PONPY (Q5R4N9) RNA polymerase I-specific transcription initiation factor|
           RRN3
          Length = 650

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 272 QIPQKYQPSEPWYMMDLLV 328
           QI  +Y PS PW++M +LV
Sbjct: 190 QIIARYVPSTPWFLMPILV 208

>DC1L1_CHICK (Q90828) Cytoplasmic dynein 1 light intermediate chain 1 (Dynein|
           light intermediate chain 1, cytosolic) (Dynein light
           chain A) (DLC-A) (LIC57/59)
          Length = 515

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 214 HDKQLGLPHSSFRT--ANRAISDTPKVPALRTVVHD 315
           +DK++G+ H +F+T  A  +  D+ + P +R  VH+
Sbjct: 319 NDKKIGILHENFQTLKAEDSFEDSIRKPPVRKFVHE 354

>TAT_SIVV1 (P27975) TAT protein (Transactivating regulatory protein)|
          Length = 119

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 220 KQLGLPHSSFRTANRAISDTPKVPA-LRTVVHDGPPSFTTQELQ 348
           K LG+ + +FRT  + I+   ++P   +++   G  S TTQE Q
Sbjct: 46  KGLGITYHAFRTRRKKIASADRIPVPQQSISIRGRDSQTTQESQ 89


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,852,781
Number of Sequences: 219361
Number of extensions: 1235317
Number of successful extensions: 2710
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2710
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)