ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC103673.8| Mus musculus chromosome 1, clone RP24-336F10, com... 42 0.62
2emb|AJ297357.1|HSA297357 Homo sapiens partial LIMD1 gene for LIM... 42 0.62
3gb|AC098476.2| Homo sapiens chromosome 3 clone RP11-697K23, comp... 42 0.62
4emb|AJ289880.1|HSA289880 Homo sapiens KIAA0851 gene (partial), X... 42 0.62
5gb|AC005669.1|AC005669 Homo sapiens chromosome 3, clone hRPK.165... 42 0.62
6gb|AC165258.2| Mus musculus BAC clone RP23-127F20 from chromosom... 40 2.4
7gb|AC132401.4| Mus musculus BAC clone RP23-404A8 from chromosome... 40 2.4
8emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chr... 40 2.4
9ref|NM_001024205.1| Mus musculus nuclear fragile X mental retard... 40 2.4
10gb|AC024561.5| Homo sapiens chromosome 5 clone CTB-94B10, comple... 40 2.4
11emb|AL929238.22| Mouse DNA sequence from clone RP23-480I16 on ch... 40 2.4
12gb|AF250284.1|AF250284 Amsacta moorei entomopoxvirus, complete g... 40 2.4
13gb|U30297.1|AMU30297 Amsacta moorei entomopoxvirus filament-asso... 40 2.4
14ref|XM_468755.1| Oryza sativa (japonica cultivar-group), mRNA 38 9.7
15ref|NM_198785.1| Rattus norvegicus ubiquitin specific protease 4... 38 9.7
16gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
17gb|AC124981.25| Mus musculus chromosome 5, clone RP24-170P20, co... 38 9.7
18gb|AC164980.3| Mus musculus BAC clone RP23-184C3 from chromosome... 38 9.7
19gb|AC163688.5| Mus musculus BAC clone CH25-316N15 from chromosom... 38 9.7
20gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
21gb|AC135361.3| Mus musculus BAC clone RP23-216A21 from chromosom... 38 9.7
22gb|AF127019.7| Homo sapiens chromosome 8 clone GS1-188e4 map p23... 38 9.7
23gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 9.7
24gb|AC010976.6| Homo sapiens BAC clone RP11-286H15 from 2, comple... 38 9.7
25gb|AC136637.3| Mus musculus BAC clone RP24-327G11 from chromosom... 38 9.7
26gb|AC136023.5| Mus musculus BAC clone RP24-501J4 from chromosome... 38 9.7
27gb|AC113181.7| Mus musculus chromosome 5, clone RP23-359I6, comp... 38 9.7
28emb|CR387998.9| Zebrafish DNA sequence from clone DKEY-29H15 in ... 38 9.7
29gb|AC127324.4| Mus musculus BAC clone RP23-244I2 from chromosome... 38 9.7
30gb|AC122796.3| Mus musculus BAC clone RP24-347J6 from chromosome... 38 9.7
31gb|AC129187.4| Mus musculus BAC clone RP23-427D4 from chromosome... 38 9.7
32gb|AC126273.3| Mus musculus BAC clone RP23-99P15 from 7, complet... 38 9.7
33gb|AC124545.4| Mus musculus BAC clone RP23-272D9 from 7, complet... 38 9.7
34gb|AC116572.3| Mus musculus BAC clone RP23-101D16 from 14, compl... 38 9.7
35ref|XM_660555.1| Cryptosporidium hominis TU502 hypothetical prot... 38 9.7
36gb|AC157595.4| Mus musculus BAC clone RP23-238F18 from chromosom... 38 9.7
37gb|AC007607.6| Homo sapiens chromosome 16 clone RP11-369H7, comp... 38 9.7
38emb|AL512636.12| Human DNA sequence from clone RP11-213D12 on ch... 38 9.7
39emb|AL133269.17| Human DNA sequence from clone RP3-468K3 on chro... 38 9.7
40gb|AC164113.3| Mus musculus BAC clone RP24-228K9 from chromosome... 38 9.7
41gb|AC157603.4| Mus musculus BAC clone RP23-55O6 from chromosome ... 38 9.7
42gb|AC090662.9| Homo sapiens chromosome 11, clone RP11-184J19, co... 38 9.7
43dbj|AK220190.1| Mus musculus mRNA for mKIAA4202 protein 38 9.7
44dbj|AB073880.1| Rattus norvegicus synUSP mRNA for synaptic ubiqu... 38 9.7
45gb|AC078784.24| Homo sapiens 3 BAC RP11-63L4 (Roswell Park Cance... 38 9.7
46gb|AC079361.17| Homo sapiens 11 BAC RP11-184J19 (Roswell Park Ca... 38 9.7
47gb|AC113147.3| Homo sapiens chromosome 8, clone RP11-357H1, comp... 38 9.7
48dbj|AK133251.1| Mus musculus adult male testis cDNA, RIKEN full-... 38 9.7
49gb|AC009707.9| Homo sapiens chromosome 8, clone RP11-315I17, com... 38 9.7
50gb|AC084222.6| Homo sapiens chromosome 8, clone RP11-79I19, comp... 38 9.7
51gb|AC023306.8| Homo sapiens chromosome 8, clone RP11-199C5, comp... 38 9.7
52gb|AF165818.4|AF165818 Guillardia theta nucleomorph chromosome 1... 38 9.7
53dbj|AK166158.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-... 38 9.7
54gb|AC018757.6| Homo sapiens chromosome 5 clone CTB-45J8, complet... 38 9.7
55gb|AC009039.7| Homo sapiens chromosome 16 clone RP11-152O14, com... 38 9.7
56ref|XM_627041.1| Cryptosporidium parvum Iowa II hypothetical pro... 38 9.7
57gb|AC156566.3| Mus musculus BAC clone RP23-337B16 from chromosom... 38 9.7
58dbj|AK077945.1| Mus musculus 13 days embryo male testis cDNA, RI... 38 9.7
59gb|AC158996.2| Mus musculus BAC clone RP24-137I10 from chromosom... 38 9.7
60dbj|AK052297.1| Mus musculus 13 days embryo heart cDNA, RIKEN fu... 38 9.7
61dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
62dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
63gb|AC008625.5|AC008625 Homo sapiens chromosome 5 clone CTB-157D1... 38 9.7
64gb|AC007341.10| Homo sapiens chromosome 16 clone RP11-381L15, co... 38 9.7
65gb|AC008675.5|AC008675 Homo sapiens chromosome 5 clone CTB-45I8,... 38 9.7
66gb|AC068282.8| Homo sapiens BAC clone RP11-314L11 from 2, comple... 38 9.7
67gb|AC084467.1|AC084467 Caenorhabditis briggsae cosmid CB043F15, ... 38 9.7
68dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 38 9.7
69dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 38 9.7
70dbj|AB007649.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 38 9.7
71gb|AC007225.2|AC007225 Homo sapiens chromosome 16 clone RPCI-11_... 38 9.7
72dbj|AK102797.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 9.7
73gb|AC091272.12| Mus musculus chromosome 1, clone RP23-74B7, comp... 38 9.7
74gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
75gb|AC167333.3| Mus musculus BAC clone RP23-92L4 from chromosome ... 38 9.7
76gb|CP000208.1| Drosophila melanogaster genomic scaffold 21100002... 38 9.7
77gb|AC150684.2| Mus musculus BAC clone RP23-268G6 from 7, complet... 38 9.7
78gb|BC021769.1| Mus musculus ubiquitin specific peptidase 48, mRN... 38 9.7
79emb|AL928852.7| Zebrafish DNA sequence from clone CH211-287A12, ... 38 9.7
80dbj|AP006091.1| Lotus japonicus genomic DNA, chromosome 4, clone... 38 9.7
81gb|AC167979.3| Mus musculus BAC clone CH36-45M24 from chromosome... 38 9.7
82gb|AC171681.1| Mus musculus BAC clone RP24-530O2 from chromosome... 38 9.7
83gb|AC123821.4| Mus musculus BAC clone RP23-466F9 from chromosome... 38 9.7
84emb|AL672241.6| Mouse DNA sequence from clone RP23-147D3 on chro... 38 9.7 
>gb|AC103673.8| Mus musculus chromosome 1, clone RP24-336F10, complete sequence
          Length = 187158

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 116   gttggcatcagggagaggagg 136
             |||||||||||||||||||||
Sbjct: 32304 gttggcatcagggagaggagg 32324
to top
>emb|AJ297357.1|HSA297357 Homo sapiens partial LIMD1 gene for LIM domains containing protein 1
             and KIAA0851 gene
          Length = 87434

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 71    agtagtctgtagtttgtattg 91
             |||||||||||||||||||||
Sbjct: 80817 agtagtctgtagtttgtattg 80837
to top
>gb|AC098476.2| Homo sapiens chromosome 3 clone RP11-697K23, complete sequence
          Length = 176741

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 71    agtagtctgtagtttgtattg 91
             |||||||||||||||||||||
Sbjct: 87251 agtagtctgtagtttgtattg 87271
to top
>emb|AJ289880.1|HSA289880 Homo sapiens KIAA0851 gene (partial), XT3 gene and LZTFL1 gene
          Length = 142281

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 71    agtagtctgtagtttgtattg 91
             |||||||||||||||||||||
Sbjct: 25634 agtagtctgtagtttgtattg 25654
to top
>gb|AC005669.1|AC005669 Homo sapiens chromosome 3, clone hRPK.165_I_16, complete sequence
          Length = 176968

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 71     agtagtctgtagtttgtattg 91
              |||||||||||||||||||||
Sbjct: 170284 agtagtctgtagtttgtattg 170264
to top
>gb|AC165258.2| Mus musculus BAC clone RP23-127F20 from chromosome 17, complete sequence
          Length = 203927

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    agggagaggaggaaaaagaa 144
              ||||||||||||||||||||
Sbjct: 180676 agggagaggaggaaaaagaa 180695
to top
>gb|AC132401.4| Mus musculus BAC clone RP23-404A8 from chromosome 3, complete sequence
          Length = 200657

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    agggagaggaggaaaaagaa 144
              ||||||||||||||||||||
Sbjct: 138128 agggagaggaggaaaaagaa 138147
to top
>emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chromosome 11 Contains the 5'
              end of a novel gene, two novel genes, the Taok1 gene for
              TAO kinase 1, a eukaryotic translation initiation factor 2
              subunit 1 alpha (Eif2s1) pseudogene, a ribosomal protein S2
              (Rps2) pseudogene, the Cryba1 gene for crystallin beta A1
              and two CpG islands, complete sequence
          Length = 220230

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 70     aagtagtctgtagtttgtattgat 93
              |||||||||||||||||| |||||
Sbjct: 205841 aagtagtctgtagtttgtgttgat 205864
to top
>ref|NM_001024205.1| Mus musculus nuclear fragile X mental retardation protein interacting
            protein 2 (Nufip2), mRNA
          Length = 10383

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 70   aagtagtctgtagtttgtattgat 93
            |||||||||||||||||| |||||
Sbjct: 7674 aagtagtctgtagtttgtgttgat 7697
to top
>gb|AC024561.5| Homo sapiens chromosome 5 clone CTB-94B10, complete sequence
          Length = 155125

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   atcagggagaggaggaaaaa 141
             ||||||||||||||||||||
Sbjct: 75835 atcagggagaggaggaaaaa 75816
to top
>emb|AL929238.22| Mouse DNA sequence from clone RP23-480I16 on chromosome 2, complete
             sequence
          Length = 174226

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   agggagaggaggaaaaagaa 144
             ||||||||||||||||||||
Sbjct: 31913 agggagaggaggaaaaagaa 31932
to top
>gb|AF250284.1|AF250284 Amsacta moorei entomopoxvirus, complete genome
          Length = 232392

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    tctgtagtttgtattgataataat 99
             |||||| |||||||||||||||||
Sbjct: 32291 tctgtaatttgtattgataataat 32314
to top
>gb|U30297.1|AMU30297 Amsacta moorei entomopoxvirus filament-associated late protein,
           FALPE, complete cds
          Length = 779

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 76  tctgtagtttgtattgataataat 99
           |||||| |||||||||||||||||
Sbjct: 299 tctgtaatttgtattgataataat 276
to top
>ref|XM_468755.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 609

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 125 agggagaggaggaaaaaga 143
           |||||||||||||||||||
Sbjct: 485 agggagaggaggaaaaaga 503
to top
>ref|NM_198785.1| Rattus norvegicus ubiquitin specific protease 48 (Usp48), mRNA
          Length = 5738

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 128 gagaggaggaaaaagaatt 146
           |||||||||||||||||||
Sbjct: 418 gagaggaggaaaaagaatt 436
to top
>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19
             map E30331S, complete sequence
          Length = 164820

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 125   agggagaggaggaaaaaga 143
             |||||||||||||||||||
Sbjct: 27963 agggagaggaggaaaaaga 27981
to top
>gb|AC124981.25| Mus musculus chromosome 5, clone RP24-170P20, complete sequence
          Length = 153767

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   agaggaggaaaaagaatta 147
             |||||||||||||||||||
Sbjct: 70783 agaggaggaaaaagaatta 70801
to top
>gb|AC164980.3| Mus musculus BAC clone RP23-184C3 from chromosome 7, complete
            sequence
          Length = 218755

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 126  gggagaggaggaaaaagaa 144
            |||||||||||||||||||
Sbjct: 7985 gggagaggaggaaaaagaa 8003
to top
>gb|AC163688.5| Mus musculus BAC clone CH25-316N15 from chromosome 12, complete
             sequence
          Length = 106789

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 122   atcagggagaggaggaaaaagaa 144
             ||||||||||||||||| |||||
Sbjct: 94541 atcagggagaggaggaagaagaa 94519
to top
>gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0052H02, complete sequence
          Length = 159632

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 153   acaaattacagacctatctatgt 175
             |||||||||||| ||||||||||
Sbjct: 84816 acaaattacagagctatctatgt 84794
to top
>gb|AC135361.3| Mus musculus BAC clone RP23-216A21 from chromosome 14, complete sequence
          Length = 203946

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 125    agggagaggaggaaaaaga 143
              |||||||||||||||||||
Sbjct: 160241 agggagaggaggaaaaaga 160223
to top
>gb|AF127019.7| Homo sapiens chromosome 8 clone GS1-188e4 map p23.2, complete sequence
          Length = 182548

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 122    atcagggagaggaggaaaa 140
              |||||||||||||||||||
Sbjct: 114517 atcagggagaggaggaaaa 114499
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 125      agggagaggaggaaaaaga 143
                |||||||||||||||||||
Sbjct: 17535780 agggagaggaggaaaaaga 17535762
to top
>gb|AC010976.6| Homo sapiens BAC clone RP11-286H15 from 2, complete sequence
          Length = 204142

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 80    tagtttgtattgataataatgga 102
             |||||||||||||||||| ||||
Sbjct: 40176 tagtttgtattgataatagtgga 40154
to top
>gb|AC136637.3| Mus musculus BAC clone RP24-327G11 from chromosome 18, complete
             sequence
          Length = 149724

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 128   gagaggaggaaaaagaatt 146
             |||||||||||||||||||
Sbjct: 70234 gagaggaggaaaaagaatt 70216
to top
>gb|AC136023.5| Mus musculus BAC clone RP24-501J4 from chromosome 7, complete sequence
          Length = 138729

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 126    gggagaggaggaaaaagaa 144
              |||||||||||||||||||
Sbjct: 101770 gggagaggaggaaaaagaa 101788



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 126   gggagaggaggaaaaagaa 144
             |||||||||||||||||||
Sbjct: 28847 gggagaggaggaaaaagaa 28865
to top
>gb|AC113181.7| Mus musculus chromosome 5, clone RP23-359I6, complete sequence
          Length = 213684

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 125    agggagaggaggaaaaaga 143
              |||||||||||||||||||
Sbjct: 146623 agggagaggaggaaaaaga 146641
to top
>emb|CR387998.9| Zebrafish DNA sequence from clone DKEY-29H15 in linkage group 1, complete
              sequence
          Length = 128837

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 123    tcagggagaggaggaaaaa 141
              |||||||||||||||||||
Sbjct: 125883 tcagggagaggaggaaaaa 125901
to top
>gb|AC127324.4| Mus musculus BAC clone RP23-244I2 from chromosome 7, complete sequence
          Length = 176387

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 126   gggagaggaggaaaaagaa 144
             |||||||||||||||||||
Sbjct: 75993 gggagaggaggaaaaagaa 75975



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 126  gggagaggaggaaaaagaa 144
            |||||||||||||||||||
Sbjct: 3484 gggagaggaggaaaaagaa 3466
to top
>gb|AC122796.3| Mus musculus BAC clone RP24-347J6 from chromosome 7, complete sequence
          Length = 166768

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 126    gggagaggaggaaaaagaa 144
              |||||||||||||||||||
Sbjct: 142353 gggagaggaggaaaaagaa 142335
to top
>gb|AC129187.4| Mus musculus BAC clone RP23-427D4 from chromosome 5, complete sequence
          Length = 198245

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 125   agggagaggaggaaaaaga 143
             |||||||||||||||||||
Sbjct: 47203 agggagaggaggaaaaaga 47221
to top
>gb|AC126273.3| Mus musculus BAC clone RP23-99P15 from 7, complete sequence
          Length = 182698

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 126   gggagaggaggaaaaagaa 144
             |||||||||||||||||||
Sbjct: 30601 gggagaggaggaaaaagaa 30583
to top
>gb|AC124545.4| Mus musculus BAC clone RP23-272D9 from 7, complete sequence
          Length = 169442

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 126    gggagaggaggaaaaagaa 144
              |||||||||||||||||||
Sbjct: 152418 gggagaggaggaaaaagaa 152436
to top
>gb|AC116572.3| Mus musculus BAC clone RP23-101D16 from 14, complete sequence
          Length = 199090

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 125    agggagaggaggaaaaaga 143
              |||||||||||||||||||
Sbjct: 109638 agggagaggaggaaaaaga 109620
to top
>ref|XM_660555.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.80158)
            partial mRNA
          Length = 3720

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 84   ttgtattgataataatgga 102
            |||||||||||||||||||
Sbjct: 1044 ttgtattgataataatgga 1026
to top
>gb|AC157595.4| Mus musculus BAC clone RP23-238F18 from chromosome 7, complete sequence
          Length = 196922

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 126    gggagaggaggaaaaagaa 144
              |||||||||||||||||||
Sbjct: 134938 gggagaggaggaaaaagaa 134956



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 126   gggagaggaggaaaaagaa 144
             |||||||||||||||||||
Sbjct: 62015 gggagaggaggaaaaagaa 62033
to top
>gb|AC007607.6| Homo sapiens chromosome 16 clone RP11-369H7, complete sequence
          Length = 158941

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 125   agggagaggaggaaaaagaatta 147
             |||||||||| ||||||||||||
Sbjct: 82834 agggagaggaagaaaaagaatta 82856
to top
>emb|AL512636.12| Human DNA sequence from clone RP11-213D12 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 160255

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 117   ttggcatcagggagaggag 135
             |||||||||||||||||||
Sbjct: 89100 ttggcatcagggagaggag 89082
to top
>emb|AL133269.17| Human DNA sequence from clone RP3-468K3 on chromosome 6q25-26 Contains
             a beta tubulin pseudogene, complete sequence
          Length = 90687

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 155   aaattacagacctatctat 173
             |||||||||||||||||||
Sbjct: 21557 aaattacagacctatctat 21539
to top
>gb|AC164113.3| Mus musculus BAC clone RP24-228K9 from chromosome 15, complete sequence
          Length = 147934

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 125   agggagaggaggaaaaaga 143
             |||||||||||||||||||
Sbjct: 75862 agggagaggaggaaaaaga 75880
to top
>gb|AC157603.4| Mus musculus BAC clone RP23-55O6 from chromosome 7, complete sequence
          Length = 151519

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 126  gggagaggaggaaaaagaa 144
            |||||||||||||||||||
Sbjct: 7984 gggagaggaggaaaaagaa 8002
to top
>gb|AC090662.9| Homo sapiens chromosome 11, clone RP11-184J19, complete sequence
          Length = 177722

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 124   cagggagaggaggaaaaag 142
             |||||||||||||||||||
Sbjct: 54012 cagggagaggaggaaaaag 53994
to top
>dbj|AK220190.1| Mus musculus mRNA for mKIAA4202 protein
          Length = 2288

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 128 gagaggaggaaaaagaatt 146
           |||||||||||||||||||
Sbjct: 396 gagaggaggaaaaagaatt 414
to top
>dbj|AB073880.1| Rattus norvegicus synUSP mRNA for synaptic ubiquitin-specific
           protease, complete cds
          Length = 5738

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 128 gagaggaggaaaaagaatt 146
           |||||||||||||||||||
Sbjct: 418 gagaggaggaaaaagaatt 436
to top
>gb|AC078784.24| Homo sapiens 3 BAC RP11-63L4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165413

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 126    gggagaggaggaaaaagaa 144
              |||||||||||||||||||
Sbjct: 162454 gggagaggaggaaaaagaa 162472
to top
>gb|AC079361.17| Homo sapiens 11 BAC RP11-184J19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177714

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 124    cagggagaggaggaaaaag 142
              |||||||||||||||||||
Sbjct: 123710 cagggagaggaggaaaaag 123728
to top
>gb|AC113147.3| Homo sapiens chromosome 8, clone RP11-357H1, complete sequence
          Length = 194518

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 122   atcagggagaggaggaaaa 140
             |||||||||||||||||||
Sbjct: 14805 atcagggagaggaggaaaa 14823
to top
>dbj|AK133251.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4932423I15 product:ubiquitin specific
           protease 31, full insert sequence
          Length = 3551

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 128 gagaggaggaaaaagaatt 146
           |||||||||||||||||||
Sbjct: 452 gagaggaggaaaaagaatt 470
to top
>gb|AC009707.9| Homo sapiens chromosome 8, clone RP11-315I17, complete sequence
          Length = 176193

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 122   atcagggagaggaggaaaa 140
             |||||||||||||||||||
Sbjct: 11412 atcagggagaggaggaaaa 11394
to top
>gb|AC084222.6| Homo sapiens chromosome 8, clone RP11-79I19, complete sequence
          Length = 157678

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 122    atcagggagaggaggaaaa 140
              |||||||||||||||||||
Sbjct: 117017 atcagggagaggaggaaaa 117035
to top
>gb|AC023306.8| Homo sapiens chromosome 8, clone RP11-199C5, complete sequence
          Length = 153197

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 122   atcagggagaggaggaaaa 140
             |||||||||||||||||||
Sbjct: 81859 atcagggagaggaggaaaa 81877
to top
>gb|AF165818.4|AF165818 Guillardia theta nucleomorph chromosome 1, complete sequence
          Length = 196216

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 81    agtttgtattgataataat 99
             |||||||||||||||||||
Sbjct: 21233 agtttgtattgataataat 21251
to top
>dbj|AK166158.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched
           library, clone:G730049C23 product:ubiquitin specific
           protease 31, full insert sequence
          Length = 2062

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 128 gagaggaggaaaaagaatt 146
           |||||||||||||||||||
Sbjct: 438 gagaggaggaaaaagaatt 456
to top
>gb|AC018757.6| Homo sapiens chromosome 5 clone CTB-45J8, complete sequence
          Length = 186418

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 106    ggcttttgccgttggcatc 124
              |||||||||||||||||||
Sbjct: 171392 ggcttttgccgttggcatc 171374
to top
>gb|AC009039.7| Homo sapiens chromosome 16 clone RP11-152O14, complete sequence
          Length = 163228

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 124   cagggagaggaggaaaaag 142
             |||||||||||||||||||
Sbjct: 11990 cagggagaggaggaaaaag 12008
to top
>ref|XM_627041.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_1340),
            partial mRNA
          Length = 8421

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 84   ttgtattgataataatgga 102
            |||||||||||||||||||
Sbjct: 5688 ttgtattgataataatgga 5670
to top
>gb|AC156566.3| Mus musculus BAC clone RP23-337B16 from chromosome 7, complete sequence
          Length = 198071

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 126    gggagaggaggaaaaagaa 144
              |||||||||||||||||||
Sbjct: 142906 gggagaggaggaaaaagaa 142888



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 126   gggagaggaggaaaaagaa 144
             |||||||||||||||||||
Sbjct: 70397 gggagaggaggaaaaagaa 70379
to top
>dbj|AK077945.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030456M03 product:cytochrome
            P450, 11a, cholesterol side chain cleavage, full insert
            sequence
          Length = 3443

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 123  tcagggagaggaggaaaaagaat 145
            |||||||||||||| ||||||||
Sbjct: 2293 tcagggagaggaggcaaaagaat 2271
to top
>gb|AC158996.2| Mus musculus BAC clone RP24-137I10 from chromosome 9, complete sequence
          Length = 154654

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 123    tcagggagaggaggaaaaagaat 145
              |||||||||||||| ||||||||
Sbjct: 136730 tcagggagaggaggcaaaagaat 136752
to top
>dbj|AK052297.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
           library, clone:D330022K21 product:hypothetical Ubiquitin
           carboxyl-terminal hydrolase family 2 containing protein,
           full insert sequence
          Length = 3760

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 128 gagaggaggaaaaagaatt 146
           |||||||||||||||||||
Sbjct: 376 gagaggaggaaaaagaatt 394
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 153     acaaattacagacctatctatgt 175
               |||||||||||| ||||||||||
Sbjct: 2805009 acaaattacagagctatctatgt 2804987
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 125      agggagaggaggaaaaaga 143
                |||||||||||||||||||
Sbjct: 17529321 agggagaggaggaaaaaga 17529303
to top
>gb|AC008625.5|AC008625 Homo sapiens chromosome 5 clone CTB-157D17, complete sequence
          Length = 137592

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 106   ggcttttgccgttggcatc 124
             |||||||||||||||||||
Sbjct: 61902 ggcttttgccgttggcatc 61920
to top
>gb|AC007341.10| Homo sapiens chromosome 16 clone RP11-381L15, complete sequence
          Length = 168612

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 124    cagggagaggaggaaaaag 142
              |||||||||||||||||||
Sbjct: 164020 cagggagaggaggaaaaag 164038
to top
>gb|AC008675.5|AC008675 Homo sapiens chromosome 5 clone CTB-45I8, complete sequence
          Length = 186415

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 106   ggcttttgccgttggcatc 124
             |||||||||||||||||||
Sbjct: 15027 ggcttttgccgttggcatc 15045
to top
>gb|AC068282.8| Homo sapiens BAC clone RP11-314L11 from 2, complete sequence
          Length = 205342

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 80     tagtttgtattgataataatgga 102
              |||||||||||||||||| ||||
Sbjct: 168461 tagtttgtattgataatagtgga 168439
to top
>gb|AC084467.1|AC084467 Caenorhabditis briggsae cosmid CB043F15, complete sequence
          Length = 56511

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 70    aagtagtctgtagtttgta 88
             |||||||||||||||||||
Sbjct: 10040 aagtagtctgtagtttgta 10058
to top
>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence
          Length = 3288558

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 26      caatactcaaggcatcaaa 44
               |||||||||||||||||||
Sbjct: 2996545 caatactcaaggcatcaaa 2996563
to top
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 111     ttgccgttggcatcaggga 129
               |||||||||||||||||||
Sbjct: 1759224 ttgccgttggcatcaggga 1759242
to top
>dbj|AB007649.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLE2
          Length = 58527

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 134   aggaaaaagaattagtgtcacaa 156
             ||||||||||||| |||||||||
Sbjct: 34728 aggaaaaagaattggtgtcacaa 34750
to top
>gb|AC007225.2|AC007225 Homo sapiens chromosome 16 clone RPCI-11_480G7, complete sequence
          Length = 218892

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 137    aaaaagaattagtgtcacaaatt 159
              ||||||||||||||| |||||||
Sbjct: 104271 aaaaagaattagtgttacaaatt 104293
to top
>dbj|AK102797.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108D09, full
            insert sequence
          Length = 2625

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 153  acaaattacagacctatctatgt 175
            |||||||||||| ||||||||||
Sbjct: 2462 acaaattacagagctatctatgt 2440
to top
>gb|AC091272.12| Mus musculus chromosome 1, clone RP23-74B7, complete sequence
          Length = 252476

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 127    ggagaggaggaaaaagaat 145
              |||||||||||||||||||
Sbjct: 196220 ggagaggaggaaaaagaat 196202
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 153     acaaattacagacctatctatgt 175
               |||||||||||| ||||||||||
Sbjct: 2814040 acaaattacagagctatctatgt 2814018
to top
>gb|AC167333.3| Mus musculus BAC clone RP23-92L4 from chromosome 5, complete sequence
          Length = 236596

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 129    agaggaggaaaaagaatta 147
              |||||||||||||||||||
Sbjct: 209910 agaggaggaaaaagaatta 209928
to top
>gb|CP000208.1| Drosophila melanogaster genomic scaffold 211000022280732
          Length = 94131

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 61    taatgctacaagtagtctgtagt 83
             |||||||||||| ||||||||||
Sbjct: 84210 taatgctacaaggagtctgtagt 84188
to top
>gb|AC150684.2| Mus musculus BAC clone RP23-268G6 from 7, complete sequence
          Length = 193525

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 126   gggagaggaggaaaaagaa 144
             |||||||||||||||||||
Sbjct: 55859 gggagaggaggaaaaagaa 55841
to top
>gb|BC021769.1| Mus musculus ubiquitin specific peptidase 48, mRNA (cDNA clone
           IMAGE:3979404), complete cds
          Length = 2076

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 128 gagaggaggaaaaagaatt 146
           |||||||||||||||||||
Sbjct: 394 gagaggaggaaaaagaatt 412
to top
>emb|AL928852.7| Zebrafish DNA sequence from clone CH211-287A12, complete sequence
          Length = 157466

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 55     ttaatctaatgctacaagt 73
              |||||||||||||||||||
Sbjct: 138386 ttaatctaatgctacaagt 138404
to top
>dbj|AP006091.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT21D16, TM0157a,
             complete sequence
          Length = 72616

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 128   gagaggaggaaaaagaatt 146
             |||||||||||||||||||
Sbjct: 44839 gagaggaggaaaaagaatt 44821
to top
>gb|AC167979.3| Mus musculus BAC clone CH36-45M24 from chromosome 12, complete sequence
          Length = 173138

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 122   atcagggagaggaggaaaaagaa 144
             ||||||||||||||||| |||||
Sbjct: 20451 atcagggagaggaggaagaagaa 20429
to top
>gb|AC171681.1| Mus musculus BAC clone RP24-530O2 from chromosome 14, complete sequence
          Length = 198038

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 44     attcacaactcttaatcta 62
              |||||||||||||||||||
Sbjct: 138714 attcacaactcttaatcta 138732
to top
>gb|AC123821.4| Mus musculus BAC clone RP23-466F9 from chromosome 7, complete sequence
          Length = 174785

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 126    gggagaggaggaaaaagaa 144
              |||||||||||||||||||
Sbjct: 162551 gggagaggaggaaaaagaa 162533
to top
>emb|AL672241.6| Mouse DNA sequence from clone RP23-147D3 on chromosome 2, complete
              sequence
          Length = 197925

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 117    ttggcatcagggagaggag 135
              |||||||||||||||||||
Sbjct: 183371 ttggcatcagggagaggag 183353


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,997,813
Number of Sequences: 3902068
Number of extensions: 1997813
Number of successful extensions: 156261
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 155755
Number of HSP's gapped (non-prelim): 506
length of query: 195
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 173
effective length of database: 17,147,199,772
effective search space: 2966465560556
effective search space used: 2966465560556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top