>SPB4_ASPOR (Q2UBZ5) ATP-dependent rRNA helicase spb4 (EC 3.6.1.-)|
          Length = 638

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +3

Query: 21  QPAFHTTARIQFRLSPSCI-LTRKPCTTLGYTLQSKISESSLPSFAFHGLQLIHAYIGSG 197
           +P   T++R    +SPS      +  +++G+T  + +  S++P F  H   ++ A  GSG
Sbjct: 4   KPPAGTSSRAWDGVSPSLSEWVLEAVSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSG 63

Query: 198 ETGSTLRP 221
           +T S L P
Sbjct: 64  KTLSFLIP 71

>BCK2_YEAST (P33306) Protein BCK2 (Bypass of kinase C protein)|
          Length = 851

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +3

Query: 12  SGAQPAFHTTARIQFRLSPSCILTRKPCTTLGYTLQSKISESSLPS-FAFHGLQLIHAYI 188
           S AQ   H+ + I    +PS  L   P    GYTL S  S SS P+    H +     ++
Sbjct: 490 SDAQRIQHSNSYIT---TPSSSLVTPPYYMTGYTLPSSASASSTPNVLETHNMN----FV 542

Query: 189 GSGETGSTLRPFPCFSSATK 248
            S  T ++ RP   FSS  K
Sbjct: 543 PSTSTVTSYRPSSNFSSFDK 562

>SPB4_EMENI (Q5B8F4) ATP-dependent rRNA helicase spb4 (EC 3.6.1.-)|
          Length = 638

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 96  TTLGYTLQSKISESSLPSFAFHGLQLIHAYIGSGETGSTLRP 221
           +++G+T  + +  S++P F  H   ++ A  GSG+T S L P
Sbjct: 30  SSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIP 71

>SPB4_ASPFU (Q4WYJ7) ATP-dependent rRNA helicase spb4 (EC 3.6.1.-)|
          Length = 640

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 96  TTLGYTLQSKISESSLPSFAFHGLQLIHAYIGSGETGSTLRP 221
           +++G+T  + +  S++P F  H   ++ A  GSG+T S L P
Sbjct: 30  SSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIP 71

>COA1_SHEEP (Q28559) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha) [Includes:|
            Biotin carboxylase (EC 6.3.4.14)]
          Length = 2346

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +2

Query: 110  HLTVQNLRELPTEFCLPRPSVNTRIYRLRRNWE-------HPPSVPLLLLSDKICSL*G 265
            H  + NL  +   +CLP P  ++R+    ++W          PS+PLL L D + S+ G
Sbjct: 854  HYVLDNLVNVMNGYCLPDPFFSSRV----KDWVEGLMKTLRDPSLPLLELQDIMTSVSG 908

>COA1_BOVIN (Q9TTS3) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha) [Includes:|
            Biotin carboxylase (EC 6.3.4.14)]
          Length = 2346

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +2

Query: 110  HLTVQNLRELPTEFCLPRPSVNTR----IYRLRRNWEHPPSVPLLLLSDKICSL*G 265
            H  + NL  +   +CLP P  ++R    + RL +     PS+PLL L D + S+ G
Sbjct: 854  HYVLDNLVNVMNGYCLPDPFFSSRVKDWVERLMKTL-RDPSLPLLELQDIMTSVSG 908

>GIDA_AZOSE (Q5P4J6) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 652

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
 Frame = +2

Query: 98  NAGLHLTVQNLRELP-------TEFCLPRPSVNTRIYRLRRNWEHPPSVP 226
           NA L LT +  REL          FC  R ++     RLR  W HP  VP
Sbjct: 443 NADLRLTEKG-RELGLVDDVRWAAFCEKRDAIERETARLRAAWAHPARVP 491

>COAC_CHICK (P11029) Acetyl-CoA carboxylase (EC 6.4.1.2) (ACC) [Includes: Biotin|
            carboxylase (EC 6.3.4.14)]
          Length = 2324

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +2

Query: 110  HLTVQNLRELPTEFCLPRPSVNTR----IYRLRRNWEHPPSVPLLLLSDKICSL*G 265
            H  + NL  +   +CLP P  +++    + RL +     PS+PLL L D + S+ G
Sbjct: 854  HYVLDNLVNVMNGYCLPEPYFSSKVKGWVERLMKTL-RDPSLPLLELQDIMTSVSG 908

>ZSWM2_MOUSE (Q9D9X6) Zinc finger SWIM domain-containing protein 2|
          Length = 631

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 22/75 (29%), Positives = 37/75 (49%)
 Frame = +2

Query: 2   QKTQRGTTCLSYNSTNTVSAVPVMHSY*ETLYNAGLHLTVQNLRELPTEFCLPRPSVNTR 181
           QKT RG   ++YN+  ++ +    H     L +  L+LT+ NL    T+  L +   N  
Sbjct: 540 QKTSRGYEHINYNTRKSLGSRLRQHKRSSALSSEDLNLTI-NLG--TTKLSLSKRQ-NNS 595

Query: 182 IYRLRRNWEHPPSVP 226
           + ++R+   HPP  P
Sbjct: 596 MGKVRQKLGHPPRRP 610

>YN21_CAEEL (P34580) Putative ATP-dependent RNA helicase T26G10.1 in chromosome|
           III (EC 3.6.1.-)
          Length = 489

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 93  CTTLGYTLQSKISESSLPSFAFHGLQLIH-AYIGSGETGSTLRP 221
           C  LG+   SKI +++LP  A  G  +I  A  GSG+TG+   P
Sbjct: 59  CQRLGWMKPSKIQQAALP-HALQGKDVIGLAETGSGKTGAFAIP 101

>ERM_STRSA (P06573) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)|
           (Macrolide-lincosamide-streptogramin B resistance
           protein)
          Length = 245

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 113 LTVQNLRELPTEFCLPRPSVNTRIYRLRRNWEHPPSVP 226
           +++Q L +LP E   P+P VN+ + +L R   H   VP
Sbjct: 149 VSIQQLLKLPAECFHPKPKVNSVLIKLTR---HTTDVP 183

>ERM_STRPN (P21236) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)|
           (Macrolide-lincosamide-streptogramin B resistance
           protein) (ErmAM)
          Length = 245

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 113 LTVQNLRELPTEFCLPRPSVNTRIYRLRRNWEHPPSVP 226
           +++Q L +LP E   P+P VN+ + +L R   H   VP
Sbjct: 149 VSIQQLLKLPAECFHPKPKVNSVLIKLTR---HTTDVP 183

>ERMB_ENTFA (P20173) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)|
           (Macrolide-lincosamide-streptogramin B resistance
           protein)
          Length = 245

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 113 LTVQNLRELPTEFCLPRPSVNTRIYRLRRNWEHPPSVP 226
           +++Q L +LP E   P+P VN+ + +L R   H   VP
Sbjct: 149 VSIQQLLKLPAECFHPKPKVNSVLIKLTR---HTTDVP 183

>ERM1_ENTFA (P0A4D5) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)|
           (Macrolide-lincosamide-streptogramin B resistance
           protein)
          Length = 245

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 113 LTVQNLRELPTEFCLPRPSVNTRIYRLRRNWEHPPSVP 226
           +++Q L +LP E   P+P VN+ + +L R   H   VP
Sbjct: 149 VSIQQLLKLPAECFHPKPKVNSVLIKLTR---HTTDVP 183

>ERM1_CLOPE (P0A4D6) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)|
           (Macrolide-lincosamide-streptogramin B resistance
           protein)
          Length = 245

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 113 LTVQNLRELPTEFCLPRPSVNTRIYRLRRNWEHPPSVP 226
           +++Q L +LP E   P+P VN+ + +L R   H   VP
Sbjct: 149 VSIQQLLKLPAECFHPKPKVNSVLIKLTR---HTTDVP 183

>COA1_RAT (P11497) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha) [Includes:|
            Biotin carboxylase (EC 6.3.4.14)]
          Length = 2345

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +2

Query: 110  HLTVQNLRELPTEFCLPRPSVNTR----IYRLRRNWEHPPSVPLLLLSDKICSL*G 265
            H  + NL  +   +CLP P  +++    + RL +     PS+PLL L D + S+ G
Sbjct: 853  HYVLDNLVNVMNGYCLPDPFFSSKVKDWVERLMKTL-RDPSLPLLELQDIMTSVSG 907

>SODE_SCHMA (P16026) Extracellular superoxide dismutase [Cu-Zn] precursor (EC|
           1.15.1.1) (EC-SOD)
          Length = 184

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 7   DAAGHNLPFIQQHEYSFGCPRHAFLLGN 90
           +A  H  PF Q+H    G PRHA  LGN
Sbjct: 89  EAGPHFNPFNQRHGPRHGYPRHAGDLGN 116

>COA1_HUMAN (Q13085) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha) [Includes:|
            Biotin carboxylase (EC 6.3.4.14)]
          Length = 2346

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +2

Query: 110  HLTVQNLRELPTEFCLPRPSVNTR----IYRLRRNWEHPPSVPLLLLSDKICSL*G 265
            H  + NL  +   +CLP P  +++    + RL +     PS+PLL L D + S+ G
Sbjct: 854  HYVLDNLVNVMNGYCLPDPFFSSKVKDWVERLMKTL-RDPSLPLLELQDIMTSVSG 908


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,422,245
Number of Sequences: 219361
Number of extensions: 799003
Number of successful extensions: 1929
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1929
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)