ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence 527 e-147
2ref|XM_792835.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 3.5
3gb|AC138593.14| Mus musculus chromosome 8, clone RP24-280K15, co... 40 3.5
4gb|AC153549.5| Mus musculus 10 BAC RP23-222O23 (Roswell Park Can... 40 3.5
5gb|AC099713.5| Mus musculus chromosome 15, clone RP23-447B6, com... 40 3.5
6gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 40 3.5
7gb|AC168051.3| Mus musculus BAC clone RP23-169M5 from chromosome... 40 3.5

>gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence
          Length = 77136

 Score =  527 bits (266), Expect = e-147
 Identities = 266/266 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1     ccaaaagacgcagcggggcacaacctgcctttcatacaacagcacgaatacagtttcggc 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58759 ccaaaagacgcagcggggcacaacctgcctttcatacaacagcacgaatacagtttcggc 58700

                                                                         
Query: 61    tgtccccgtcatgcattcttactaggaaaccctgtacaacgctgggttacaccttacagt 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58699 tgtccccgtcatgcattcttactaggaaaccctgtacaacgctgggttacaccttacagt 58640

                                                                         
Query: 121   ccaaaatctcagagagctccctaccgagttttgccttccacggccttcagttaatacacg 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58639 ccaaaatctcagagagctccctaccgagttttgccttccacggccttcagttaatacacg 58580

                                                                         
Query: 181   catatataggctcaggagaaactgggagcaccctccgtccgttcccttgcttctcctcag 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58579 catatataggctcaggagaaactgggagcaccctccgtccgttcccttgcttctcctcag 58520

                                       
Query: 241   cgacaaaatttgcagcctctagggag 266
             ||||||||||||||||||||||||||
Sbjct: 58519 cgacaaaatttgcagcctctagggag 58494



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>ref|XM_792835.1| PREDICTED: Strongylocentrotus purpuratus similar to coagulation
           factor V precursor (LOC593356), mRNA
          Length = 930

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 98  aacgctgggttacaccttacagtc 121
           |||||||||||||| |||||||||
Sbjct: 719 aacgctgggttacagcttacagtc 742



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>gb|AC138593.14| Mus musculus chromosome 8, clone RP24-280K15, complete sequence
          Length = 169176

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     cttactaggaaaccctgtac 97
              ||||||||||||||||||||
Sbjct: 159652 cttactaggaaaccctgtac 159633



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>gb|AC153549.5| Mus musculus 10 BAC RP23-222O23 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 217249

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    catgcattcttactaggaaa 89
             ||||||||||||||||||||
Sbjct: 88005 catgcattcttactaggaaa 88024



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>gb|AC099713.5| Mus musculus chromosome 15, clone RP23-447B6, complete sequence
          Length = 199130

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    aaaatctcagagagctccct 142
              ||||||||||||||||||||
Sbjct: 165350 aaaatctcagagagctccct 165331



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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    gttttgccttccacggcctt 167
              ||||||||||||||||||||
Sbjct: 379195 gttttgccttccacggcctt 379176



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>gb|AC168051.3| Mus musculus BAC clone RP23-169M5 from chromosome 8, complete sequence
          Length = 222981

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     cttactaggaaaccctgtac 97
              ||||||||||||||||||||
Sbjct: 157371 cttactaggaaaccctgtac 157390


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,811,500
Number of Sequences: 3902068
Number of extensions: 1811500
Number of successful extensions: 35288
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35273
Number of HSP's gapped (non-prelim): 15
length of query: 266
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 244
effective length of database: 17,147,199,772
effective search space: 4183916744368
effective search space used: 4183916744368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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