ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YIF1A_BRARE (Q6PC24) Protein YIF1A (YIP1-interacting factor homo... 28 4.9
2YCF2_MARPO (P09975) Protein ycf2 28 8.4

>YIF1A_BRARE (Q6PC24) Protein YIF1A (YIP1-interacting factor homolog A)|
          Length = 307

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 79  VICKITLGSNSYFLILTYSTCKFNFPRLIRIICFRLSFSILSSV 210
           V C +  GS+ Y++ L +S+C   F      I   L   ILSS+
Sbjct: 229 VFCGLLFGSDGYYVALAWSSCALMF-----FIVRSLKMKILSSI 267



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>YCF2_MARPO (P09975) Protein ycf2|
          Length = 2136

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = +1

Query: 124  LTYSTCKFNFPRLIRIICFRLSFSILSSVV 213
            LTY+  K NF R+ +I+ +++  +I+ +++
Sbjct: 1623 LTYTNNKLNFDRIFKIVIYKVGKTIIQNIL 1652


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,967,130
Number of Sequences: 219361
Number of extensions: 456559
Number of successful extensions: 937
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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