Clone Name | rbastl47b05 |
---|---|
Clone Library Name | barley_pub |
>gb|U41557.1| Caenorhabditis elegans cosmid C50F7, complete sequence Length = 31414 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 acttcaaactgtacaacacat 82 ||||||||||||||||||||| Sbjct: 8253 acttcaaactgtacaacacat 8233
>emb|AL121761.5|HSJ122P22 Human DNA sequence from clone RP1-122P22 on chromosome 20 Contains the 3' end the SLC24A3 gene for solute carrier family 24 (sodium/potassium/calcium exchanger) member 3, a novel gene and a CpG island, complete sequence Length = 118990 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 agcaagcagacctaatttaca 365 ||||||||||||||||||||| Sbjct: 117220 agcaagcagacctaatttaca 117240
>gb|AC161207.4| Mus musculus chromosome 1, clone RP23-66G23, complete sequence Length = 197037 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 166 atatgtttccagtttcctccc 186 ||||||||||||||||||||| Sbjct: 30787 atatgtttccagtttcctccc 30807
>gb|AC068780.31| Homo sapiens 12 BAC RP11-163B7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 105836 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 tttggagtgcactgcattgta 277 ||||||||||||||||||||| Sbjct: 101 tttggagtgcactgcattgta 121
>gb|AC138331.4| Homo sapiens 12 BAC RP11-781A6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 113301 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 tttggagtgcactgcattgta 277 ||||||||||||||||||||| Sbjct: 7616 tttggagtgcactgcattgta 7636
>emb|BX005234.15| Zebrafish DNA sequence from clone DKEY-7J14 in linkage group 16, complete sequence Length = 222420 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 61 gacttcaaactgtacaacacataat 85 ||||||||| ||||||||||||||| Sbjct: 213533 gacttcaaaatgtacaacacataat 213509
>gb|AC112941.7| Mus musculus chromosome 1, clone RP23-466C15, complete sequence Length = 166705 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 166 atatgtttccagtttcctccc 186 ||||||||||||||||||||| Sbjct: 105303 atatgtttccagtttcctccc 105323
>emb|Z84720.1|HS450C20 Human DNA sequence from clone RP3-450C20 on chromosome Xq21-22, complete sequence Length = 118758 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 tgacttcaaactgtacaaca 79 |||||||||||||||||||| Sbjct: 53479 tgacttcaaactgtacaaca 53498
>emb|X74476.1|HPV34 Human papillomavirus type 34 genomic DNA Length = 7723 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 atatgtttccagtttcctcc 185 |||||||||||||||||||| Sbjct: 2169 atatgtttccagtttcctcc 2150
>gb|AF399922.1| Aedes aegypti glucosamine-fructose-6-phosphate aminotransferase gene, complete cds Length = 6106 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 cataatatcacgcgtcaaaattga 103 |||||||||| ||||||||||||| Sbjct: 55 cataatatcaagcgtcaaaattga 78
>gb|AC091646.6| Homo sapiens chromosome 18, clone RP11-433A23, complete sequence Length = 187755 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tcaaactgtacaacacataa 84 |||||||||||||||||||| Sbjct: 83309 tcaaactgtacaacacataa 83328
>gb|AC096865.2| Homo sapiens chromosome 18 clone RP11-600G22, complete sequence Length = 194277 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tcaaactgtacaacacataa 84 |||||||||||||||||||| Sbjct: 123331 tcaaactgtacaacacataa 123312
>gb|AC026029.8| Homo sapiens BAC clone RP11-16G16 from 4, complete sequence Length = 173067 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 tgacttcaaactgtacaaca 79 |||||||||||||||||||| Sbjct: 119858 tgacttcaaactgtacaaca 119877
>gb|AC079452.5| Homo sapiens BAC clone RP11-964P11 from 2, complete sequence Length = 178573 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 tgacttcaaactgtacaaca 79 |||||||||||||||||||| Sbjct: 157740 tgacttcaaactgtacaaca 157759
>emb|BX004821.5| Zebrafish DNA sequence from clone CH211-171A11 in linkage group 19, complete sequence Length = 127311 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cagtttcctccccatataca 194 |||||||||||||||||||| Sbjct: 27011 cagtttcctccccatataca 27030
>gb|AE003818.3| Drosophila melanogaster chromosome 2R, section 32 of 73 of the complete sequence Length = 291923 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 taaattacgggtatatgttt 173 |||||||||||||||||||| Sbjct: 83152 taaattacgggtatatgttt 83133
>gb|AC006422.1|AC006422 Drosophila melanogaster, chromosome 2R, region 50A2-50A3, P1 clones DS08976 and DS01149, complete sequence Length = 129605 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 taaattacgggtatatgttt 173 |||||||||||||||||||| Sbjct: 124008 taaattacgggtatatgttt 123989
>gb|AC091144.12| Homo sapiens chromosome 8, clone RP11-359B20, complete sequence Length = 185872 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ccatgcccagcaattttgca 242 |||||||||||||||||||| Sbjct: 28021 ccatgcccagcaattttgca 28002 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,584,395 Number of Sequences: 3902068 Number of extensions: 3584395 Number of successful extensions: 64741 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64715 Number of HSP's gapped (non-prelim): 26 length of query: 408 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 386 effective length of database: 17,147,199,772 effective search space: 6618819111992 effective search space used: 6618819111992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)