ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, ... 504 e-139
2gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (U... 323 2e-85
3gb|BT019213.1| Zea mays clone Contig886.F mRNA sequence 157 3e-35
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
6dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 4e-19
7dbj|AK111741.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 4e-19
8dbj|AK104898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 4e-19
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 103 4e-19
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 103 4e-19
11emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 103 4e-19
12emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa... 103 4e-19
13emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa... 103 4e-19
14gb|BT019260.1| Zea mays clone Contig933.F mRNA sequence 58 2e-05
15gb|BT018436.1| Zea mays clone EL01N0372B11.d mRNA sequence 58 2e-05
16gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, ... 50 0.006
17ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activati... 46 0.086
18gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 ma... 46 0.086
19gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, co... 46 0.086
20dbj|AK220705.1| Arabidopsis thaliana mRNA for putative ubiquitin... 46 0.086
21gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, co... 46 0.086
22gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating e... 46 0.086
23emb|BX821151.1|CNS0AAA1 Arabidopsis thaliana Full-length cDNA Co... 46 0.086
24emb|BX820519.1|CNS0A9M5 Arabidopsis thaliana Full-length cDNA Co... 46 0.086
25emb|BX820277.1|CNS0A9OY Arabidopsis thaliana Full-length cDNA Co... 46 0.086
26gb|BC076655.1| Xenopus tropicalis matrin 3, mRNA (cDNA clone MGC... 44 0.34
27gb|AC151307.2| Xenopus tropicalis clone CH216-61M14, complete se... 44 0.34
28ref|NM_001006791.1| Xenopus tropicalis matrin 3 (matr3), mRNA 44 0.34
29emb|AJ299395.1|CAR299395 Cicer arietinum partial mRNA for ubiqui... 44 0.34
30emb|CR761638.2| Xenopus tropicalis finished cDNA, clone TGas107n11 44 0.34
31gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, com... 40 5.3
32ref|XM_752686.1| Ustilago maydis 521 hypothetical protein (UM016... 40 5.3
33ref|XM_753433.1| Ustilago maydis 521 hypothetical protein (UM023... 40 5.3
34gb|AE014075.1| Escherichia coli CFT073, complete genome 40 5.3
35gb|CP000243.1| Escherichia coli UTI89, complete genome 40 5.3
36emb|AL591845.27| Human DNA sequence from clone RP11-268J15 on ch... 40 5.3
37dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
38dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 5.3
39gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Can... 40 5.3
40gb|AF231794.1|AF231794 Pinus taeda clone LC15b2 microsatellite s... 40 5.3
41gb|AC074052.6| Homo sapiens chromosome 16 clone RP11-483K5, comp... 40 5.3
42dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
43dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
44dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
45gb|AC018769.2|AC018769 Homo sapiens chromosome 16 clone RP11-568... 40 5.3
46emb|Z65094.1|HS19B9F H.sapiens CpG island DNA genomic Mse1 fragm... 40 5.3
47emb|AM236324.1| Escherichia coli genome fragment containing the ... 40 5.3 
>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3695

 Score =  504 bits (254), Expect = e-139
 Identities = 352/382 (92%), Gaps = 2/382 (0%)
 Strand = Plus / Minus

                                                                        
Query: 19   agatgatgttgtgcgt-gtcttgtgaatcgtgatgtctggtaacaactccagatcagccc 77
            |||||||||||||| | |||| |||||| || ||||||||||||||| | ||||||||||
Sbjct: 3653 agatgatgttgtgcctagtctcgtgaatagttatgtctggtaacaacccgagatcagccc 3594

                                                                        
Query: 78   ccaatgatccaatcgacatcgagatggtagaaaggaaaa-tcagtcagtaatgtggctta 136
            |||||||||| ||||||||| |||||||||||||||||| ||||||  ||||||||||||
Sbjct: 3593 ccaatgatccgatcgacatcaagatggtagaaaggaaaaatcagtcgataatgtggctta 3534

                                                                        
Query: 137  agcccccactcggcttacagtcactaatgcaactcatgacttgtcagtcgatcaggcatg 196
            ||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||  |||||
Sbjct: 3533 agcccccactcagcttacaatcactaatgcgactcatgacatgtcagtcgatccagcatg 3474

                                                                        
Query: 197  accaaccacaagatcatgtgaacacagatgaagcgcttcttcagcggaagtagacagaca 256
            ||||||||||||||||||| ||| |||| | |||||||||||||||||||||||| ||||
Sbjct: 3473 accaaccacaagatcatgtaaacgcagaaggagcgcttcttcagcggaagtagaccgaca 3414

                                                                        
Query: 257  caagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccaccacgacgtcgagat 316
            |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 3413 caagtgggatgtcgacatcgttgtcgtcgtcatcctcacaggccaccacaacgtcgagat 3354

                                                                        
Query: 317  gacgccggtaagaggacacctccatcttggccacctccctggcaacatcaactacctttc 376
            ||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct: 3353 gacgccggtaagagggcacctccatcttagccacctccctggcaacatcaacaaccttcc 3294

                                  
Query: 377  tgtcaagccgttccttgtgcct 398
            ||||||||||||||||||||||
Sbjct: 3293 tgtcaagccgttccttgtgcct 3272
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>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds
          Length = 3586

 Score =  323 bits (163), Expect = 2e-85
 Identities = 205/219 (93%)
 Strand = Plus / Minus

                                                                        
Query: 180  tcagtcgatcaggcatgaccaaccacaagatcatgtgaacacagatgaagcgcttcttca 239
            ||||| ||||| |||||||||||||||||||||| | ||| |||| | ||||||||||||
Sbjct: 3395 tcagtagatcaagcatgaccaaccacaagatcatttaaacgcagaaggagcgcttcttca 3336

                                                                        
Query: 240  gcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggc 299
            |||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 3335 gcggaagtagaccgacacaagtgggatgtcgacatcattgtcgtcgtcatcctcacacgc 3276

                                                                        
Query: 300  caccacgacgtcgagatgacgccggtaagaggacacctccatcttggccacctccctggc 359
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3275 caccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctccctggc 3216

                                                   
Query: 360  aacatcaactacctttctgtcaagccgttccttgtgcct 398
            ||||||||||||||| |||||||||||||||||||||||
Sbjct: 3215 aacatcaactaccttcctgtcaagccgttccttgtgcct 3177



 Score =  165 bits (83), Expect = 1e-37
 Identities = 121/131 (92%), Gaps = 2/131 (1%)
 Strand = Plus / Minus

                                                                        
Query: 19   agatgatgttgtgcgt-gtcttgtgaatcgtgatgtctggtaacaactccagatcagccc 77
            |||||||||||||| | |||| ||||||| ||||||||||||||||| | ||||||||||
Sbjct: 3534 agatgatgttgtgcctagtctcgtgaatcatgatgtctggtaacaacccgagatcagccc 3475

                                                                        
Query: 78   ccaatgatccaatcgacatcga-gatggtagaaaggaaaatcagtcagtaatgtggctta 136
            |||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct: 3474 ccaatgatccgatcgacatcaaagatggtagaaaggaaaatcagtcggtaatgtggctta 3415

                       
Query: 137  agcccccactc 147
            |||||||||||
Sbjct: 3414 agcccccactc 3404
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>gb|BT019213.1| Zea mays clone Contig886.F mRNA sequence
          Length = 836

 Score =  157 bits (79), Expect = 3e-35
 Identities = 136/155 (87%)
 Strand = Plus / Minus

                                                                       
Query: 241 cggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggcc 300
           |||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 779 cggaagtaaatagacacaagcgggatgtcgacgtcattgtcatcgtcatcctcacaggcc 720

                                                                       
Query: 301 accacgacgtcgagatgacgccggtaagaggacacctccatcttggccacctccctggca 360
           ||||| ||||| ||||| || ||||| || | |||||||| |||||||||||||||||| 
Sbjct: 719 accacaacgtccagatggcggcggtaggaaggcacctccaccttggccacctccctggcc 660

                                              
Query: 361 acatcaactacctttctgtcaagccgttccttgtg 395
           ||||| || |||||  |||| ||||| ||||||||
Sbjct: 659 acatccaccaccttcttgtccagccgctccttgtg 625
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score =  103 bits (52), Expect = 4e-19
 Identities = 136/164 (82%)
 Strand = Plus / Plus

                                                                          
Query: 235    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 312150 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 312209

                                                                          
Query: 295    caggccaccacgacgtcgagatgacgccggtaagaggacacctccatcttggccacctcc 354
              || |||||||| ||||| ||||| |||||||| | || |||||||| ||| |||||||||
Sbjct: 312210 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 312269

                                                          
Query: 355    ctggcaacatcaactacctttctgtcaagccgttccttgtgcct 398
              || || ||||| || |||||  |||| || || |||||||||||
Sbjct: 312270 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcct 312313



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 121    tcagtaatgtggcttaagcccccact 146
              ||||||||||||||||| ||||||||
Sbjct: 312039 tcagtaatgtggcttaaacccccact 312064
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score =  103 bits (52), Expect = 4e-19
 Identities = 136/164 (82%)
 Strand = Plus / Plus

                                                                          
Query: 235    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 295048 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 295107

                                                                          
Query: 295    caggccaccacgacgtcgagatgacgccggtaagaggacacctccatcttggccacctcc 354
              || |||||||| ||||| ||||| |||||||| | || |||||||| ||| |||||||||
Sbjct: 295108 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 295167

                                                          
Query: 355    ctggcaacatcaactacctttctgtcaagccgttccttgtgcct 398
              || || ||||| || |||||  |||| || || |||||||||||
Sbjct: 295168 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcct 295211



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 121    tcagtaatgtggcttaagcccccact 146
              ||||||||||||||||| ||||||||
Sbjct: 294937 tcagtaatgtggcttaaacccccact 294962
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>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full
            insert sequence
          Length = 3724

 Score =  103 bits (52), Expect = 4e-19
 Identities = 136/164 (82%)
 Strand = Plus / Minus

                                                                        
Query: 235  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 3469 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 3410

                                                                        
Query: 295  caggccaccacgacgtcgagatgacgccggtaagaggacacctccatcttggccacctcc 354
            || |||||||| ||||| ||||| |||||||| | || |||||||| ||| |||||||||
Sbjct: 3409 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 3350

                                                        
Query: 355  ctggcaacatcaactacctttctgtcaagccgttccttgtgcct 398
            || || ||||| || |||||  |||| || || |||||||||||
Sbjct: 3349 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcct 3306



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 121  tcagtaatgtggcttaagcccccact 146
            ||||||||||||||||| ||||||||
Sbjct: 3580 tcagtaatgtggcttaaacccccact 3555
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>dbj|AK111741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049I12, full
            insert sequence
          Length = 1533

 Score =  103 bits (52), Expect = 4e-19
 Identities = 136/164 (82%)
 Strand = Plus / Minus

                                                                        
Query: 235  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 1362 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 1303

                                                                        
Query: 295  caggccaccacgacgtcgagatgacgccggtaagaggacacctccatcttggccacctcc 354
            || |||||||| ||||| ||||| |||||||| | || |||||||| ||| |||||||||
Sbjct: 1302 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 1243

                                                        
Query: 355  ctggcaacatcaactacctttctgtcaagccgttccttgtgcct 398
            || || ||||| || |||||  |||| || || |||||||||||
Sbjct: 1242 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcct 1199



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 121  tcagtaatgtggcttaagcccccact 146
            ||||||||||||||||| ||||||||
Sbjct: 1473 tcagtaatgtggcttaaacccccact 1448
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>dbj|AK104898.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C03, full
            insert sequence
          Length = 1510

 Score =  103 bits (52), Expect = 4e-19
 Identities = 136/164 (82%)
 Strand = Plus / Minus

                                                                        
Query: 235  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 1253 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 1194

                                                                        
Query: 295  caggccaccacgacgtcgagatgacgccggtaagaggacacctccatcttggccacctcc 354
            || |||||||| ||||| ||||| |||||||| | || |||||||| ||| |||||||||
Sbjct: 1193 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 1134

                                                        
Query: 355  ctggcaacatcaactacctttctgtcaagccgttccttgtgcct 398
            || || ||||| || |||||  |||| || || |||||||||||
Sbjct: 1133 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcct 1090



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 121  tcagtaatgtggcttaagcccccact 146
            ||||||||||||||||| ||||||||
Sbjct: 1364 tcagtaatgtggcttaaacccccact 1339
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  103 bits (52), Expect = 4e-19
 Identities = 136/164 (82%)
 Strand = Plus / Plus

                                                                          
Query: 235    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 295048 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 295107

                                                                          
Query: 295    caggccaccacgacgtcgagatgacgccggtaagaggacacctccatcttggccacctcc 354
              || |||||||| ||||| ||||| |||||||| | || |||||||| ||| |||||||||
Sbjct: 295108 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 295167

                                                          
Query: 355    ctggcaacatcaactacctttctgtcaagccgttccttgtgcct 398
              || || ||||| || |||||  |||| || || |||||||||||
Sbjct: 295168 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcct 295211



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 121    tcagtaatgtggcttaagcccccact 146
              ||||||||||||||||| ||||||||
Sbjct: 294937 tcagtaatgtggcttaaacccccact 294962
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  103 bits (52), Expect = 4e-19
 Identities = 136/164 (82%)
 Strand = Plus / Plus

                                                                          
Query: 235    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 312150 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 312209

                                                                          
Query: 295    caggccaccacgacgtcgagatgacgccggtaagaggacacctccatcttggccacctcc 354
              || |||||||| ||||| ||||| |||||||| | || |||||||| ||| |||||||||
Sbjct: 312210 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 312269

                                                          
Query: 355    ctggcaacatcaactacctttctgtcaagccgttccttgtgcct 398
              || || ||||| || |||||  |||| || || |||||||||||
Sbjct: 312270 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcct 312313



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 121    tcagtaatgtggcttaagcccccact 146
              ||||||||||||||||| ||||||||
Sbjct: 312039 tcagtaatgtggcttaaacccccact 312064
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>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 160673

 Score =  103 bits (52), Expect = 4e-19
 Identities = 136/164 (82%)
 Strand = Plus / Minus

                                                                        
Query: 235  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 9945 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 9886

                                                                        
Query: 295  caggccaccacgacgtcgagatgacgccggtaagaggacacctccatcttggccacctcc 354
            || |||||||| ||||| ||||| |||||||| | || |||||||| ||| |||||||||
Sbjct: 9885 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 9826

                                                        
Query: 355  ctggcaacatcaactacctttctgtcaagccgttccttgtgcct 398
            || || ||||| || |||||  |||| || || |||||||||||
Sbjct: 9825 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcct 9782



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 121   tcagtaatgtggcttaagcccccact 146
             ||||||||||||||||| ||||||||
Sbjct: 10056 tcagtaatgtggcttaaacccccact 10031
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>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152222

 Score =  103 bits (52), Expect = 4e-19
 Identities = 136/164 (82%)
 Strand = Plus / Plus

                                                                         
Query: 235   cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
             ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 45201 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 45260

                                                                         
Query: 295   caggccaccacgacgtcgagatgacgccggtaagaggacacctccatcttggccacctcc 354
             || |||||||| ||||| ||||| |||||||| | || |||||||| ||| |||||||||
Sbjct: 45261 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 45320

                                                         
Query: 355   ctggcaacatcaactacctttctgtcaagccgttccttgtgcct 398
             || || ||||| || |||||  |||| || || |||||||||||
Sbjct: 45321 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcct 45364



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 121   tcagtaatgtggcttaagcccccact 146
             ||||||||||||||||| ||||||||
Sbjct: 45090 tcagtaatgtggcttaaacccccact 45115
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>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 164143

 Score =  103 bits (52), Expect = 4e-19
 Identities = 136/164 (82%)
 Strand = Plus / Plus

                                                                        
Query: 235  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 294
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 2366 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 2425

                                                                        
Query: 295  caggccaccacgacgtcgagatgacgccggtaagaggacacctccatcttggccacctcc 354
            || |||||||| ||||| ||||| |||||||| | || |||||||| ||| |||||||||
Sbjct: 2426 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 2485

                                                        
Query: 355  ctggcaacatcaactacctttctgtcaagccgttccttgtgcct 398
            || || ||||| || |||||  |||| || || |||||||||||
Sbjct: 2486 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcct 2529



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 121  tcagtaatgtggcttaagcccccact 146
            ||||||||||||||||| ||||||||
Sbjct: 2255 tcagtaatgtggcttaaacccccact 2280
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>gb|BT019260.1| Zea mays clone Contig933.F mRNA sequence
          Length = 771

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 334 acctccatcttggccacctccctggcaacatcaactacctt 374
           ||||||| |||||||||||||||||| |||||||| |||||
Sbjct: 307 acctccaccttggccacctccctggcgacatcaaccacctt 347
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>gb|BT018436.1| Zea mays clone EL01N0372B11.d mRNA sequence
          Length = 1726

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 334  acctccatcttggccacctccctggcaacatcaactacctttctgtcaagccgttccttg 393
            ||||||| |||||||||||||||||| |||||||| ||||| || |  ||||  ||||||
Sbjct: 1463 acctccaccttggccacctccctggcgacatcaaccaccttcctctgcagcctctccttg 1404

                 
Query: 394  tgcct 398
            |||||
Sbjct: 1403 tgcct 1399
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>gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3588

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 97/121 (80%)
 Strand = Plus / Minus

                                                                        
Query: 239  agcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacagg 298
            |||||||||| || ||||| || ||||||||||| ||||| || || || ||||| ||||
Sbjct: 3345 agcggaagtaaaccgacacgagggggatgtcgacgtcgttctcgtcctcgtcctcgcagg 3286

                                                                        
Query: 299  ccaccacgacgtcgagatgacgccggtaagaggacacctccatcttggccacctccctgg 358
            ||||  ||| ||| || || | ||||||   ||  || |||| |||||||||||||||||
Sbjct: 3285 ccacgccgatgtccaggtgcctccggtactcggggacgtccaccttggccacctccctgg 3226

             
Query: 359  c 359
            |
Sbjct: 3225 c 3225
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>ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activating enzyme AT2G30110
            (ATUBA1) mRNA, complete cds
          Length = 3626

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 243  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3360 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3301

               
Query: 303  cac 305
            |||
Sbjct: 3300 cac 3298
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>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete
             sequence
          Length = 83796

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                         
Query: 243   gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
             |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 53002 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 52943

                
Query: 303   cac 305
             |||
Sbjct: 52942 cac 52940
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>gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, complete cds
          Length = 3561

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 243  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3321 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3262

               
Query: 303  cac 305
            |||
Sbjct: 3261 cac 3259
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>dbj|AK220705.1| Arabidopsis thaliana mRNA for putative ubiquitin activating enzyme,
           complete cds, clone: RAFL22-01-B01
          Length = 474

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 243 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
           |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 208 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 149

              
Query: 303 cac 305
           |||
Sbjct: 148 cac 146
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>gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, complete cds
          Length = 3243

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 243  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3237 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3178

               
Query: 303  cac 305
            |||
Sbjct: 3177 cac 3175
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>gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating enzyme (UBA1) gene,
            complete cds
          Length = 3346

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 243  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3334 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3275

               
Query: 303  cac 305
            |||
Sbjct: 3274 cac 3272
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>emb|BX821151.1|CNS0AAA1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL1ZD10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 646

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 243 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
           |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 390 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 331

              
Query: 303 cac 305
           |||
Sbjct: 330 cac 328
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>emb|BX820519.1|CNS0A9M5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH43ZE11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1375

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 243  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 1167 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 1108

               
Query: 303  cac 305
            |||
Sbjct: 1107 cac 1105
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>emb|BX820277.1|CNS0A9OY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH16ZF09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 930

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 243 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 302
           |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 673 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 614

              
Query: 303 cac 305
           |||
Sbjct: 613 cac 611
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>gb|BC076655.1| Xenopus tropicalis matrin 3, mRNA (cDNA clone MGC:79524
            IMAGE:6977687), complete cds
          Length = 3174

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 334  acctccatcttggccacctccc 355
            ||||||||||||||||||||||
Sbjct: 1307 acctccatcttggccacctccc 1286
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>gb|AC151307.2| Xenopus tropicalis clone CH216-61M14, complete sequence
          Length = 164963

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 334   acctccatcttggccacctccc 355
             ||||||||||||||||||||||
Sbjct: 87684 acctccatcttggccacctccc 87705
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>ref|NM_001006791.1| Xenopus tropicalis matrin 3 (matr3), mRNA
          Length = 3174

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 334  acctccatcttggccacctccc 355
            ||||||||||||||||||||||
Sbjct: 1307 acctccatcttggccacctccc 1286
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>emb|AJ299395.1|CAR299395 Cicer arietinum partial mRNA for ubiquitin activating enzyme E1
           (ORF), clone CanUBC-1
          Length = 807

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 277 ttgtcatcgtcatcctcacaggccac 302
           ||||||||||||||||| ||||||||
Sbjct: 484 ttgtcatcgtcatcctcgcaggccac 459
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>emb|CR761638.2| Xenopus tropicalis finished cDNA, clone TGas107n11
          Length = 1855

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 334  acctccatcttggccacctccc 355
            ||||||||||||||||||||||
Sbjct: 1179 acctccatcttggccacctccc 1158
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>gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, complete sequence
          Length = 194380

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    acatcgttgtcatcgtcatc 290
              ||||||||||||||||||||
Sbjct: 158321 acatcgttgtcatcgtcatc 158340
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>ref|XM_752686.1| Ustilago maydis 521 hypothetical protein (UM01632.1) partial mRNA
          Length = 1047

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 267 gtcgacatcgttgtcatcgtcatc 290
           |||| |||||||||||||||||||
Sbjct: 585 gtcgtcatcgttgtcatcgtcatc 562
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>ref|XM_753433.1| Ustilago maydis 521 hypothetical protein (UM02379.1) partial mRNA
          Length = 3270

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 292  tcacaggccaccacgacgtc 311
            ||||||||||||||||||||
Sbjct: 2191 tcacaggccaccacgacgtc 2210
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 37      cttgtgaatcgtgatgtctg 56
               ||||||||||||||||||||
Sbjct: 2258336 cttgtgaatcgtgatgtctg 2258355
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 37      cttgtgaatcgtgatgtctg 56
               ||||||||||||||||||||
Sbjct: 2109514 cttgtgaatcgtgatgtctg 2109533
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>emb|AL591845.27| Human DNA sequence from clone RP11-268J15 on chromosome 1 Contains the
             3' end of a novel gene for thyroid hormone
             receptor-associated protein, 150 kDa subunit (TRAP150)
             (FLJ22082), a novel transcript (FLJ22938), a gene for a
             novel protein (FLJ10647), the 3' end of a gene for
             Ser/Thr-like kinase (MGC4796) and two CpG islands,
             complete sequence
          Length = 104307

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   ccacctccctggcaacatca 366
             ||||||||||||||||||||
Sbjct: 67335 ccacctccctggcaacatca 67354
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>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1485_B09
          Length = 66599

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   aagaggacacctccatcttg 345
             ||||||||||||||||||||
Sbjct: 48484 aagaggacacctccatcttg 48503
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>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 225     tgaagcgcttcttcagcgga 244
               ||||||||||||||||||||
Sbjct: 1983686 tgaagcgcttcttcagcgga 1983705
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>gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 189286

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     gagatggtagaaaggaaaat 117
              ||||||||||||||||||||
Sbjct: 153914 gagatggtagaaaggaaaat 153933
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>gb|AF231794.1|AF231794 Pinus taeda clone LC15b2 microsatellite sequence
          Length = 254

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 267 gtcgacatcgttgtcatcgtcatcctca 294
           |||| |||||| ||||||||||||||||
Sbjct: 231 gtcgtcatcgtcgtcatcgtcatcctca 204
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>gb|AC074052.6| Homo sapiens chromosome 16 clone RP11-483K5, complete sequence
          Length = 188458

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   agaggacacctccatcttgg 346
             ||||||||||||||||||||
Sbjct: 74561 agaggacacctccatcttgg 74542
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 326      aagaggacacctccatcttg 345
                ||||||||||||||||||||
Sbjct: 40249532 aagaggacacctccatcttg 40249551
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>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1793G04
          Length = 156714

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 326    aagaggacacctccatcttg 345
              ||||||||||||||||||||
Sbjct: 115310 aagaggacacctccatcttg 115329
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>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1425D05, complete sequence
          Length = 66450

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   aagaggacacctccatcttg 345
             ||||||||||||||||||||
Sbjct: 40882 aagaggacacctccatcttg 40901
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>gb|AC018769.2|AC018769 Homo sapiens chromosome 16 clone RP11-568A19, complete sequence
          Length = 157613

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 327    agaggacacctccatcttgg 346
              ||||||||||||||||||||
Sbjct: 154814 agaggacacctccatcttgg 154795
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>emb|Z65094.1|HS19B9F H.sapiens CpG island DNA genomic Mse1 fragment, clone 19b9, forward
           read cpg19b9.ft1a
          Length = 264

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 107 gaaaggaaaatcagtcagta 126
           ||||||||||||||||||||
Sbjct: 169 gaaaggaaaatcagtcagta 188
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>emb|AM236324.1| Escherichia coli genome fragment containing the yersiniabactin, cob and
             pdu gene clusters, strain A0 34/86
          Length = 84189

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    cttgtgaatcgtgatgtctg 56
             ||||||||||||||||||||
Sbjct: 54791 cttgtgaatcgtgatgtctg 54810


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,834,143
Number of Sequences: 3902068
Number of extensions: 2834143
Number of successful extensions: 54604
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54410
Number of HSP's gapped (non-prelim): 190
length of query: 398
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 376
effective length of database: 17,147,199,772
effective search space: 6447347114272
effective search space used: 6447347114272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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