ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ARR2_ARATH (Q9ZWJ9) Two-component response regulator ARR2 (Recei... 30 1.1
2LAX3_ARATH (Q9CA25) Auxin transporter-like protein 3 (AUX1-like ... 30 1.5
3SACB_ACEDI (Q43998) Levansucrase precursor (EC 2.4.1.10) (Beta-D... 28 7.3
4ZN592_HUMAN (Q92610) Zinc finger protein 592 28 7.3
5ZN592_MOUSE (Q8BHZ4) Zinc finger protein 592 (Zfp-592) 28 7.3
6NAGPA_MOUSE (Q8BJ48) N-acetylglucosamine-1-phosphodiester alpha-... 27 9.5
7SYG_TREPA (O83678) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine... 27 9.5

>ARR2_ARATH (Q9ZWJ9) Two-component response regulator ARR2 (Receiver-like|
           protein 5)
          Length = 664

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +1

Query: 85  HISFNSFQ*VGYNSNLPTSSTPIASPKGILGRNFDILPVA-SYRSGFTCQDESYF*NNKI 261
           H  FN+F      ++LP SS P+AS  GI       +PV+ SY+      D     +   
Sbjct: 453 HSVFNNFP-----ADLPRSSFPLASAPGI------SVPVSVSYQEEVNSSDAKGGSSAAT 501

Query: 262 GDTGNPNLQLFNEHTPIVPQNRQN 333
              GNP+  +FN+     PQ++Q+
Sbjct: 502 AGFGNPSYDIFND----FPQHQQH 521



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>LAX3_ARATH (Q9CA25) Auxin transporter-like protein 3 (AUX1-like protein 3)|
          Length = 470

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 80  TSTKLGNLFWGGGNMYFSSFKEYSN 6
           T TKL N FW GG++Y + F   SN
Sbjct: 32  TKTKLSNFFWHGGSVYDAWFSCASN 56



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>SACB_ACEDI (Q43998) Levansucrase precursor (EC 2.4.1.10)|
           (Beta-D-fructofuranosyl transferase) (Sucrose
           6-fructosyl transferase)
          Length = 584

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
 Frame = +1

Query: 46  PPQNKLPNFVLVHHISFNSFQ*VGYNSNLPTSSTPIASPKGILGRNFDILPVASYRSGFT 225
           PPQ  +   +   H  FN     G+     T+ TP+  P G+L +N       ++R  FT
Sbjct: 258 PPQAIITQTLGRIHADFNHVWFTGF-----TAHTPLLQPDGVLYQNGAQNEFFNFRDPFT 312

Query: 226 CQDESY-------F*NNKIGDTGNPN 282
            +D  +       F  N  G  G  N
Sbjct: 313 FEDPKHPGVNYMVFEGNTAGQRGVAN 338



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>ZN592_HUMAN (Q92610) Zinc finger protein 592|
          Length = 1267

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
 Frame = -1

Query: 259 SCCFKSRIHLGK*ILTCSWLQVVCRSSF------RGCLLGSLLVWMRLVNCYCIQLT 107
           S C   RIH  K    C    V+CRS++        CL  +  V  R ++C  + LT
Sbjct: 754 SFCAHQRIHAHKSPYCCPECGVLCRSAYFQTHVKENCLHYARKVGYRCIHCGVVHLT 810



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>ZN592_MOUSE (Q8BHZ4) Zinc finger protein 592 (Zfp-592)|
          Length = 1262

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
 Frame = -1

Query: 259 SCCFKSRIHLGK*ILTCSWLQVVCRSSF------RGCLLGSLLVWMRLVNCYCIQLT 107
           S C   R+H  K    C    V+CRS++        CL  +  V  R ++C  I LT
Sbjct: 754 SFCAHQRVHAHKSPYCCPECGVLCRSAYFQTHVKENCLHYARKVGYRCIHCGVIHLT 810



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>NAGPA_MOUSE (Q8BJ48) N-acetylglucosamine-1-phosphodiester|
           alpha-N-acetylglucosaminidase precursor (EC 3.1.4.45)
           (Phosphodiester alpha-GlcNAcase) (Mannose
           6-phosphate-uncovering enzyme)
          Length = 517

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 200 TGSMSKFLPRMPFGLAIGVDEVGKLLLY 117
           TGS SKF+  M    A+G D  G+L+L+
Sbjct: 228 TGSFSKFVNVMSARTAVGHDREGQLILF 255



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>SYG_TREPA (O83678) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 462

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 180 PSEDAFWARYWCG*GW 133
           P+ED  W  YWC   W
Sbjct: 201 PAEDTHWFEYWCAQRW 216


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,395,641
Number of Sequences: 219361
Number of extensions: 1099208
Number of successful extensions: 1980
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1980
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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