ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
2dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
3dbj|AK109602.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 2e-17
4gb|AC108924.5| Homo sapiens chromosome 8, clone RP11-1113C19, co... 42 1.1
5gb|AC116154.2| Homo sapiens chromosome 8, clone RP11-927P11, com... 42 1.1
6gb|AC093788.3| Homo sapiens BAC clone RP11-218F10 from 4, comple... 42 1.1
7dbj|AP006647.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 1.1
8dbj|AP006352.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 1.1
9dbj|AP006138.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.1
10dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.1
11dbj|AP004287.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 1.1
12gb|AC163325.7| Mus musculus chromosome 1, clone RP23-76L21, comp... 40 4.2
13gb|AY591682.1| Mus musculus clone IgK8-27 immunoglobulin kappa-l... 40 4.2
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.2
15gb|AC159715.5| Mus musculus 6 BAC RP23-367A13 (Roswell Park Canc... 40 4.2
16emb|AL354982.12| Human DNA sequence from clone RP11-473H13 on ch... 40 4.2
17emb|AL157933.19| Human DNA sequence from clone RP11-395L12 on ch... 40 4.2
18gb|AC155332.10| Mus musculus 6 BAC RP24-140J8 (Roswell Park Canc... 40 4.2
19emb|BX323543.11| Zebrafish DNA sequence from clone DKEYP-67E1 in... 40 4.2
20gb|AC103891.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.2
21gb|AC103792.2| Homo sapiens chromosome 11, clone CTD-2384B9, com... 40 4.2
22gb|AC109998.2| Homo sapiens chromosome 5 clone CTD-2203A3, compl... 40 4.2
23gb|AC119156.9| Mus musculus chromosome 1, clone RP24-534J20, com... 40 4.2
24gb|AC091903.2| Homo sapiens chromosome 5 clone RP11-182I21, comp... 40 4.2
25gb|AC158672.6| Mus musculus 6 BAC RP23-64J23 (Roswell Park Cance... 40 4.2
26emb|BX284697.8| Zebrafish DNA sequence from clone DKEY-7M11 in l... 40 4.2
27dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
28emb|AL132668.4|CNS01DT9 Human chromosome 14 DNA sequence BAC R-5... 40 4.2
29gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 40 4.2
30gb|AC111089.27| Mus musculus chromosome 5, clone RP23-156F20, co... 40 4.2 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 82/93 (88%)
 Strand = Plus / Minus

                                                                           
Query: 228     actttcaccttcttgctgttggctttatcaactttctcgctttcaaccttcatctttttt 287
               |||||||||||||||||||| ||||| ||||| |||||  |||| ||||||||||| || 
Sbjct: 3070723 actttcaccttcttgctgttagctttgtcaaccttctcattttcgaccttcatcttcttg 3070664

                                                
Query: 288     atggaatccaaaagcgatgatgactgttctttg 320
               |||||||| ||||| ||||||| ||||||||||
Sbjct: 3070663 atggaatcaaaaagggatgatggctgttctttg 3070631
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>dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1178_D01
          Length = 121768

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 82/93 (88%)
 Strand = Plus / Minus

                                                                         
Query: 228   actttcaccttcttgctgttggctttatcaactttctcgctttcaaccttcatctttttt 287
             |||||||||||||||||||| ||||| ||||| |||||  |||| ||||||||||| || 
Sbjct: 90689 actttcaccttcttgctgttagctttgtcaaccttctcattttcgaccttcatcttcttg 90630

                                              
Query: 288   atggaatccaaaagcgatgatgactgttctttg 320
             |||||||| ||||| ||||||| ||||||||||
Sbjct: 90629 atggaatcaaaaagggatgatggctgttctttg 90597
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>dbj|AK109602.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-E09, full
            insert sequence
          Length = 2854

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 82/93 (88%)
 Strand = Plus / Minus

                                                                        
Query: 228  actttcaccttcttgctgttggctttatcaactttctcgctttcaaccttcatctttttt 287
            |||||||||||||||||||| ||||| ||||| |||||  |||| ||||||||||| || 
Sbjct: 2634 actttcaccttcttgctgttagctttgtcaaccttctcattttcgaccttcatcttcttg 2575

                                             
Query: 288  atggaatccaaaagcgatgatgactgttctttg 320
            |||||||| ||||| ||||||| ||||||||||
Sbjct: 2574 atggaatcaaaaagggatgatggctgttctttg 2542
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>gb|AC108924.5| Homo sapiens chromosome 8, clone RP11-1113C19, complete sequence
          Length = 125488

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 123   aattttaagtggaaaggaaaa 143
             |||||||||||||||||||||
Sbjct: 94417 aattttaagtggaaaggaaaa 94437
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>gb|AC116154.2| Homo sapiens chromosome 8, clone RP11-927P11, complete sequence
          Length = 196518

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 123  aattttaagtggaaaggaaaa 143
            |||||||||||||||||||||
Sbjct: 3937 aattttaagtggaaaggaaaa 3957
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>gb|AC093788.3| Homo sapiens BAC clone RP11-218F10 from 4, complete sequence
          Length = 160853

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 108   caactacactaccagaattttaagtggaa 136
             ||||| ||||||||||| |||||||||||
Sbjct: 46634 caactccactaccagaactttaagtggaa 46606
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>dbj|AP006647.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT29F18, TM0312,
             complete sequence
          Length = 119276

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 130   agtggaaaggaaaagcacttc 150
             |||||||||||||||||||||
Sbjct: 16799 agtggaaaggaaaagcacttc 16819
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>dbj|AP006352.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT40O04, TM0348,
            complete sequence
          Length = 105070

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 130  agtggaaaggaaaagcacttc 150
            |||||||||||||||||||||
Sbjct: 9667 agtggaaaggaaaagcacttc 9647
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>dbj|AP006138.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT37A17, TM0240,
              complete sequence
          Length = 121317

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 130    agtggaaaggaaaagcacttc 150
              |||||||||||||||||||||
Sbjct: 113236 agtggaaaggaaaagcacttc 113216
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>dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT09A07, TM0181,
              complete sequence
          Length = 185320

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 130    agtggaaaggaaaagcacttc 150
              |||||||||||||||||||||
Sbjct: 131513 agtggaaaggaaaagcacttc 131493
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>dbj|AP004287.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1471H7
          Length = 172543

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 123   aattttaagtggaaaggaaaa 143
             |||||||||||||||||||||
Sbjct: 99047 aattttaagtggaaaggaaaa 99067
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>gb|AC163325.7| Mus musculus chromosome 1, clone RP23-76L21, complete sequence
          Length = 253153

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    agactacaaagtaaactcag 99
             ||||||||||||||||||||
Sbjct: 28940 agactacaaagtaaactcag 28921
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>gb|AY591682.1| Mus musculus clone IgK8-27 immunoglobulin kappa-like gene, partial
            sequence
          Length = 2901

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 206  aatgacaagaaaaaacaatt 225
            ||||||||||||||||||||
Sbjct: 2792 aatgacaagaaaaaacaatt 2773
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 124     attttaagtggaaaggaaaa 143
               ||||||||||||||||||||
Sbjct: 7037567 attttaagtggaaaggaaaa 7037586
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>gb|AC159715.5| Mus musculus 6 BAC RP23-367A13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 209869

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    aatgacaagaaaaaacaatt 225
              ||||||||||||||||||||
Sbjct: 190288 aatgacaagaaaaaacaatt 190307
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>emb|AL354982.12| Human DNA sequence from clone RP11-473H13 on chromosome 9 Contains part
              of the gene for the likely ortholog of mouse polydom
              (POLYDOM), complete sequence
          Length = 119077

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    taccagaattttaagtggaa 136
              ||||||||||||||||||||
Sbjct: 110571 taccagaattttaagtggaa 110552
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>emb|AL157933.19| Human DNA sequence from clone RP11-395L12 on chromosome Xq21.1-21.33,
             complete sequence
          Length = 48768

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 123   aattttaagtggaaaggaaaagca 146
             |||||||||||||||| |||||||
Sbjct: 15014 aattttaagtggaaagaaaaagca 14991
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>gb|AC155332.10| Mus musculus 6 BAC RP24-140J8 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 202181

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    aatgacaagaaaaaacaatt 225
              ||||||||||||||||||||
Sbjct: 107295 aatgacaagaaaaaacaatt 107314
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>emb|BX323543.11| Zebrafish DNA sequence from clone DKEYP-67E1 in linkage group 25,
              complete sequence
          Length = 181520

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    caggtccaaatgacaagaaa 217
              ||||||||||||||||||||
Sbjct: 141185 caggtccaaatgacaagaaa 141166
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>gb|AC103891.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1175C11,
             complete sequence
          Length = 123620

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   attttaagtggaaaggaaaa 143
             ||||||||||||||||||||
Sbjct: 44798 attttaagtggaaaggaaaa 44779
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>gb|AC103792.2| Homo sapiens chromosome 11, clone CTD-2384B9, complete sequence
          Length = 115626

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    acaaagtaaactcaggagct 104
             ||||||||||||||||||||
Sbjct: 43585 acaaagtaaactcaggagct 43566
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>gb|AC109998.2| Homo sapiens chromosome 5 clone CTD-2203A3, complete sequence
          Length = 126394

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  caaatgacaagaaaaaacaa 223
            ||||||||||||||||||||
Sbjct: 1024 caaatgacaagaaaaaacaa 1005
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>gb|AC119156.9| Mus musculus chromosome 1, clone RP24-534J20, complete sequence
          Length = 185873

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    agactacaaagtaaactcag 99
             ||||||||||||||||||||
Sbjct: 64974 agactacaaagtaaactcag 64955
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>gb|AC091903.2| Homo sapiens chromosome 5 clone RP11-182I21, complete sequence
          Length = 194860

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   caaatgacaagaaaaaacaa 223
             ||||||||||||||||||||
Sbjct: 53535 caaatgacaagaaaaaacaa 53554
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>gb|AC158672.6| Mus musculus 6 BAC RP23-64J23 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 216954

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  aatgacaagaaaaaacaatt 225
            ||||||||||||||||||||
Sbjct: 1310 aatgacaagaaaaaacaatt 1329
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>emb|BX284697.8| Zebrafish DNA sequence from clone DKEY-7M11 in linkage group 1,
             complete sequence
          Length = 209946

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   aaatgacaagaaaaaacaat 224
             ||||||||||||||||||||
Sbjct: 70661 aaatgacaagaaaaaacaat 70680
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 124     attttaagtggaaaggaaaa 143
               ||||||||||||||||||||
Sbjct: 7035462 attttaagtggaaaggaaaa 7035481
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>emb|AL132668.4|CNS01DT9 Human chromosome 14 DNA sequence BAC R-550M19 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175725

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    atgacaagaaaaaacaatta 226
              ||||||||||||||||||||
Sbjct: 137047 atgacaagaaaaaacaatta 137066
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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    agaaaaaacaattatacttt 232
              ||||||||||||||||||||
Sbjct: 767198 agaaaaaacaattatacttt 767217
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>gb|AC111089.27| Mus musculus chromosome 5, clone RP23-156F20, complete sequence
          Length = 211658

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   taccagaattttaagtggaa 136
             ||||||||||||||||||||
Sbjct: 86438 taccagaattttaagtggaa 86457


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,890,692
Number of Sequences: 3902068
Number of extensions: 3890692
Number of successful extensions: 85056
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84935
Number of HSP's gapped (non-prelim): 121
length of query: 320
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 298
effective length of database: 17,147,199,772
effective search space: 5109865532056
effective search space used: 5109865532056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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