ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CREA_COCCA (Q9HFS2) DNA-binding protein creA (Carbon catabolite ... 28 7.8
2SPEB1_SYNY3 (P72703) Agmatinase 1 (EC 3.5.3.11) (Agmatine ureohy... 28 7.8

>CREA_COCCA (Q9HFS2) DNA-binding protein creA (Carbon catabolite repressor)|
          Length = 430

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 285 NHLTPGLVSALTTYHSGHLTRSCLPSSTHLVRQTDMFDD 169
           ++ +PG+ + L  YH G L+ S  PS   L R  D+  D
Sbjct: 187 SNYSPGMSNDLAAYHQGGLSNSSSPSG--LARPMDLLAD 223



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>SPEB1_SYNY3 (P72703) Agmatinase 1 (EC 3.5.3.11) (Agmatine ureohydrolase 1) (AUH|
           1)
          Length = 306

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 3   ERSNVLNITAEVSIREQYKGTVHNHLCSFKSNLK 104
           E   V+ I A   +R++++G+ HNH C  +  L+
Sbjct: 137 EPFTVVQIDAHGDMRDKFEGSCHNHACVMRRVLE 170


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,550,710
Number of Sequences: 219361
Number of extensions: 589888
Number of successful extensions: 1475
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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