>emb|CT025842.2| Medicago truncatula chromosome 5 clone mth2-54i22, COMPLETE SEQUENCE
          Length = 111922

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 84    agtttcaaaagcaatctcaaac 105
             ||||||||||||||||||||||
Sbjct: 18698 agtttcaaaagcaatctcaaac 18677

>gb|AC108057.3| Homo sapiens BAC clone RP11-374N13 from 2, complete sequence
          Length = 127242

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 177    acatgtctgtctgtctaacaa 197
              |||||||||||||||||||||
Sbjct: 117803 acatgtctgtctgtctaacaa 117783

>gb|AC125688.6| Rattus norvegicus 20 BAC CH230-186I2 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 209618

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   tcaaacatgtctgtctgtct 192
             ||||||||||||||||||||
Sbjct: 66923 tcaaacatgtctgtctgtct 66904

>gb|AC116856.8| Mus musculus chromosome 14, clone RP24-403P16, complete sequence
          Length = 196560

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 163   tattttatcatcaaacatgtctgtctgt 190
             |||||| ||||||||| |||||||||||
Sbjct: 39934 tattttctcatcaaacttgtctgtctgt 39907

>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0057E15, complete sequence
          Length = 149035

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 165   ttttatcatcaaacatgtctgtctgtct 192
             |||||||||  |||||||||||||||||
Sbjct: 38337 ttttatcattcaacatgtctgtctgtct 38310

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 99       ctcaaaccacaaaaacaaat 118
                ||||||||||||||||||||
Sbjct: 11142817 ctcaaaccacaaaaacaaat 11142836

>gb|AC114011.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078f20,
              complete sequence
          Length = 151042

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 165    ttttatcatcaaacatgtctgtctgtct 192
              |||||||||  |||||||||||||||||
Sbjct: 138162 ttttatcattcaacatgtctgtctgtct 138135

>emb|CR536619.20| Zebrafish DNA sequence from clone CH211-194H19 in linkage group 16,
             complete sequence
          Length = 179375

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   aaaccacaaaaacaaatcct 121
             ||||||||||||||||||||
Sbjct: 73607 aaaccacaaaaacaaatcct 73626

>emb|AL589649.4| Human DNA sequence from clone RP11-264J13 on chromosome 6, complete
             sequence
          Length = 44768

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 135   atatgtagaacataacagcagaaa 158
             |||||| |||||||||||||||||
Sbjct: 40501 atatgtggaacataacagcagaaa 40478

>emb|CR376765.12| Zebrafish DNA sequence from clone DKEY-208L2 in linkage group 13,
             complete sequence
          Length = 134448

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 37    tctcaatcagagaacaatacaagg 60
             |||||||||||| |||||||||||
Sbjct: 24466 tctcaatcagagcacaatacaagg 24489

>gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0011G21, from chromosome 3, complete sequence
          Length = 142401

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ctcaaaccacaaaaacaaat 118
             ||||||||||||||||||||
Sbjct: 56174 ctcaaaccacaaaaacaaat 56193

>emb|BX649403.4| Zebrafish DNA sequence from clone CH211-153M11 in linkage group 13,
              complete sequence
          Length = 170097

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     tcaaaagcaatctcaaacca 107
              ||||||||||||||||||||
Sbjct: 132286 tcaaaagcaatctcaaacca 132267

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 165      ttttatcatcaaacatgtctgtctgtct 192
                |||||||||  |||||||||||||||||
Sbjct: 16397727 ttttatcattcaacatgtctgtctgtct 16397700

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 99       ctcaaaccacaaaaacaaat 118
                ||||||||||||||||||||
Sbjct: 11139580 ctcaaaccacaaaaacaaat 11139599

>gb|AC008176.3|AC008176 Homo sapiens BAC clone RP11-451F11 from 7p11.2-p21, complete sequence
          Length = 90180

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    ctcaaaccacaaaaacaaat 118
             ||||||||||||||||||||
Sbjct: 52725 ctcaaaccacaaaaacaaat 52706

>emb|BX296535.7| Zebrafish DNA sequence from clone CH211-234I2, complete sequence
          Length = 163120

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   aaaccacaaaaacaaatcct 121
             ||||||||||||||||||||
Sbjct: 77841 aaaccacaaaaacaaatcct 77822

>gb|AC090673.5| Homo sapiens 12 BAC RP11-366L20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 178755

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    tttcaaaagcaatctcaaac 105
             ||||||||||||||||||||
Sbjct: 83086 tttcaaaagcaatctcaaac 83105

>emb|CT009602.4| PTB-121B21, complete sequence
          Length = 236109

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    ctagccactagtcaaatatg 139
              ||||||||||||||||||||
Sbjct: 235222 ctagccactagtcaaatatg 235203

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 165      ttttatcatcaaacatgtctgtctgtct 192
                |||||||||  |||||||||||||||||
Sbjct: 16488742 ttttatcattcaacatgtctgtctgtct 16488715

>gb|AC134918.5| Mus musculus BAC clone RP23-71G16 from 3, complete sequence
          Length = 191764

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 101    caaaccacaaaaacaaatcctagc 124
              ||||||||||||||||| ||||||
Sbjct: 183460 caaaccacaaaaacaaagcctagc 183483

>gb|AC138720.5| Mus musculus BAC clone RP23-192O12 from chromosome 3, complete sequence
          Length = 191825

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 101    caaaccacaaaaacaaatcctagc 124
              ||||||||||||||||| ||||||
Sbjct: 158125 caaaccacaaaaacaaagcctagc 158102

>emb|AL391155.3|CNS06C81 Human chromosome 14 DNA sequence BAC R-559M6 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 160550

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 221   ctacgagtcaggtgccctgaatgg 244
             ||||||||||||||||||| ||||
Sbjct: 45921 ctacgagtcaggtgccctggatgg 45898

>gb|AF326972.1| Homo sapiens high-mobility group protein isoform C (HMGIC) gene, intron
             3 and partial cds
          Length = 112930

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    tttcaaaagcaatctcaaac 105
             ||||||||||||||||||||
Sbjct: 97323 tttcaaaagcaatctcaaac 97342


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,455,787
Number of Sequences: 3902068
Number of extensions: 3455787
Number of successful extensions: 80688
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80552
Number of HSP's gapped (non-prelim): 136
length of query: 296
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 274
effective length of database: 17,147,199,772
effective search space: 4698332737528
effective search space used: 4698332737528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)