>PRP8_MOUSE (Q99PV0) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)|
          Length = 2335

 Score = 85.1 bits (209), Expect = 4e-17
 Identities = 34/57 (59%), Positives = 45/57 (78%)
 Frame = -2

Query: 319  WNYNFMGVKPDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEEGEVAEGDREDTFS 149
            WNYNFMGV+ DP MKY ++L  P++FYHE HRP+HFL F+ ++EGEV   DRED ++
Sbjct: 2279 WNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335

>PRP8_HUMAN (Q6P2Q9) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)|
            (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220)
          Length = 2335

 Score = 85.1 bits (209), Expect = 4e-17
 Identities = 34/57 (59%), Positives = 45/57 (78%)
 Frame = -2

Query: 319  WNYNFMGVKPDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEEGEVAEGDREDTFS 149
            WNYNFMGV+ DP MKY ++L  P++FYHE HRP+HFL F+ ++EGEV   DRED ++
Sbjct: 2279 WNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335

>PRP8_CAEEL (P34369) Pre-mRNA-splicing factor 8 homolog|
          Length = 2329

 Score = 64.3 bits (155), Expect = 7e-11
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = -2

Query: 328  NAPWNYNFMGVKPDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEEG-EVAEGDREDTF 152
            N  WNYNF G +  P MK+ + L  P+++YHEDHRP HF  F   ++       DRED F
Sbjct: 2269 NGVWNYNFQGQRWSPAMKFDVCLSNPKEYYHEDHRPVHFHNFKAFDDPLGTGSADREDAF 2328

Query: 151  S 149
            +
Sbjct: 2329 A 2329

>PRP8_YEAST (P33334) Pre-mRNA-splicing factor 8|
          Length = 2413

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 26/57 (45%), Positives = 34/57 (59%)
 Frame = -2

Query: 319  WNYNFMGVKPDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEEGEVAEGDREDTFS 149
            WNY FMG   +    Y+ K G P +FY+E HRP HFL+FS +   E  E ++ D FS
Sbjct: 2357 WNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFSELAGDEELEAEQIDVFS 2413

>LUC7L_MOUSE (Q9CYI4) Putative RNA-binding protein Luc7-like 1|
          Length = 371

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 1   SLKRRKTSYNMSRQSYTRHRALYSKLSRAHCR 96
           S +RRK S + SR  Y RHR+     SR H R
Sbjct: 284 SRERRKFSRSRSRDRYRRHRSRSRSHSRGHRR 315

>LUC7L_HUMAN (Q9NQ29) Putative RNA-binding protein Luc7-like 1 (SR+89) (Putative|
           SR protein LUC7B1)
          Length = 371

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +1

Query: 1   SLKRRKTSYNMSRQSYTRHRALYSKLSRAHCRFRYANIGRSGRAK 135
           S +RRK S + SR  + RHR+     SR H   R A+  RS + K
Sbjct: 284 SRERRKLSRSRSRDRHRRHRSRSRSHSRGH---RRASRDRSAKYK 325

>Y1545_METJA (Q58940) Putative HTH-type transcriptional regulator MJ1545|
          Length = 241

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 235 EDHRPTHFLEFSNIEEGEVAEGDREDT 155
           E   P    EF NI +GE+A GD  DT
Sbjct: 113 EYENPITLNEFVNIIDGEIAVGDNSDT 139

>CCR4_YEAST (P31384) Glucose-repressible alcohol dehydrogenase transcriptional|
           effector (EC 3.1.-.-) (Cytoplasmic deadenylase) (Carbon
           catabolite repressor protein 4)
          Length = 837

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 11/45 (24%)
 Frame = -2

Query: 322 PW------NYNFMGVKPDPLMKYSMKLGTPRD-----FYHEDHRP 221
           PW      N  F+GV+ +PL K  +K+ T +      FY  D+RP
Sbjct: 419 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 463

>ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein|
          Length = 1049

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 15/46 (32%)
 Frame = -1

Query: 311  QLHGSQARPA---------------DEVQHEAGHTPRLLPRGPQAN 219
            QLHG Q +PA                 VQH+AG  P L    PQ N
Sbjct: 871  QLHGHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQN 916


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,255,832
Number of Sequences: 219361
Number of extensions: 618275
Number of successful extensions: 1884
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1882
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)